Search Cheap Flights to
San Juan Islands

Search 400 airlines and 321,000 hotels worldwide.

Stop Planning & Start Exploring

FREE 24 hour cancellation on most flights

San Juan Islands Flights as Low as $79

Prices found within past 7 days. Prices and availability subject to change. Additional terms may apply.

Frontier Airlines
Thu, May 28 - Tue, Jun 2
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$79 Roundtrip, found 1 day ago
$79
Roundtrip
found 1 day ago
Select Frontier Airlines flight, departing Thu, May 28 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Tue, Jun 2, priced at $79 found 1 day ago
Frontier Airlines
Thu, May 28 - Tue, Jun 2
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$89 Roundtrip, found 1 day ago
$89
Roundtrip
found 1 day ago
Select Frontier Airlines flight, departing Thu, May 28 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Tue, Jun 2, priced at $89 found 1 day ago
Frontier Airlines
Thu, May 28 - Sun, May 31
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$90 Roundtrip, found 20 hours ago
$90
Roundtrip
found 20 hours ago
Select Frontier Airlines flight, departing Thu, May 28 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Sun, May 31, priced at $90 found 20 hours ago
Frontier Airlines
Sun, Jun 7 - Tue, Jun 9
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$130 Roundtrip, found 1 day ago
$130
Roundtrip
found 1 day ago
Select Frontier Airlines flight, departing Sun, Jun 7 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Tue, Jun 9, priced at $130 found 1 day ago
Frontier Airlines
Fri, Jun 5 - Sat, Jun 13
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$142 Roundtrip, found 2 days ago
$142
Roundtrip
found 2 days ago
Select Frontier Airlines flight, departing Fri, Jun 5 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Sat, Jun 13, priced at $142 found 2 days ago
American Airlines
Thu, May 28 - Tue, Jun 2
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$145 Roundtrip, found 1 day ago
$145
Roundtrip
found 1 day ago
Select American Airlines flight, departing Thu, May 28 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Tue, Jun 2, priced at $145 found 1 day ago
Frontier Airlines
Thu, May 28 - Tue, Jun 2
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$146 Roundtrip, found 1 day ago
$146
Roundtrip
found 1 day ago
Select Frontier Airlines flight, departing Thu, May 28 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Tue, Jun 2, priced at $146 found 1 day ago
Frontier Airlines
Thu, May 28 - Tue, Jun 2
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$152 Roundtrip, found 1 day ago
$152
Roundtrip
found 1 day ago
Select Frontier Airlines flight, departing Thu, May 28 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Tue, Jun 2, priced at $152 found 1 day ago
Frontier Airlines
Wed, May 20 - Thu, May 28
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$153 Roundtrip, found 1 day ago
$153
Roundtrip
found 1 day ago
Select Frontier Airlines flight, departing Wed, May 20 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Thu, May 28, priced at $153 found 1 day ago
Frontier Airlines
Thu, May 28 - Sun, May 31
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$156 Roundtrip, found 20 hours ago
$156
Roundtrip
found 20 hours ago
Select Frontier Airlines flight, departing Thu, May 28 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Sun, May 31, priced at $156 found 20 hours ago
United
Wed, Jun 3 - Tue, Jun 9
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$202 Roundtrip, found 1 hour ago
$202
Roundtrip
found 1 hour ago
Select United flight, departing Wed, Jun 3 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Tue, Jun 9, priced at $202 found 1 hour ago
Delta
Wed, Jun 3 - Tue, Jun 9
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$202 Roundtrip, found 1 hour ago
$202
Roundtrip
found 1 hour ago
Select Delta flight, departing Wed, Jun 3 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Tue, Jun 9, priced at $202 found 1 hour ago
American Airlines
Wed, Jun 3 - Tue, Jun 9
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$202 Roundtrip, found 1 hour ago
$202
Roundtrip
found 1 hour ago
Select American Airlines flight, departing Wed, Jun 3 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Tue, Jun 9, priced at $202 found 1 hour ago
Alaska Airlines
Wed, Jun 3 - Tue, Jun 9
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$202 Roundtrip, found 1 hour ago
$202
Roundtrip
found 1 hour ago
Select Alaska Airlines flight, departing Wed, Jun 3 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Tue, Jun 9, priced at $202 found 1 hour ago
Alaska Airlines
Sat, May 30 - Sat, Jun 6
LAX
Los Angeles Intl.
PAE
Seattle Paine Field Intl. Airport
$233 Roundtrip, found 7 hours ago
$233
Roundtrip
found 7 hours ago
Select Alaska Airlines flight, departing Sat, May 30 from Los Angeles Intl. to Seattle Paine Field Intl. Airport, returning Sat, Jun 6, priced at $233 found 7 hours ago
Alaska Airlines
Sat, Jun 6 - Tue, Jun 9
LAX
Los Angeles Intl.
BLI
Bellingham Intl.
$353 Roundtrip, just found
$353
Roundtrip
just found
Select Alaska Airlines flight, departing Sat, Jun 6 from Los Angeles Intl. to Bellingham Intl., returning Tue, Jun 9, priced at $353 just found

Cheap Flights to San Juan Islands

Fall in love at first flight with your vacation to San Juan Islands by saving a ton of cash on your last-minute cheap flight. There’s no more scouring the internet for a good deal—book your flight to San Juan Islands on Hotwire, and you’ll be up, up, and on a getaway in no time.

Because once the wheels are down in San Juan Islands, the good times start rolling. So buckle up, you’re in for a fun ride.

Frequently Asked Questions About flights to San Juan Islands

Don’t waste your time on endless searches for cheap airline tickets oneway or roundtrip. We’ll have you on your way to San Juan Islands with a tiny bag of pretzels in your hand before you can say “tray tables in the upright position”—and for a ticket price that works for your vacay budget.

So all you have to worry about is where you’re headed after the SEA airport.

What is the cheapest month to fly to San Juan Islands?

Airline ticket prices fluctuate all the time, depending on the day of the week or the month of the year. The cheapest round trip flights to San Juan Islands are in May, but when you book your flight on Hotwire, savings are always in season.

How many airlines fly to San Juan Islands?

Variety is the spice of life, even when it comes to booking your next trip. Want options for airlines? You’ll find 16 to choose from for your flight to San Juan Islands.

What airport is best to fly into San Juan Islands?

When you’re planning your trip to San Juan Islands, convenience is the name of the game. Luckily, San Juan Islands Deer Harbor Seaplane Base Airport is nearby so you can deplane and get going on checking off everything on your San Juan Islands must-do list.

How much are flights to San Juan Islands?

Got very cheap flights on your vacation itinerary? When you book your airline tickets to San Juan Islands on Hotwire, you may just get what’s on your getaway wish list. With tickets as low as $79, you’ll have leftover cash for at least a magazine and a bottle of water at the airport book store.

How to get cheap flights to San Juan Islands?

The trick to saving a stack of cash on your flight to San Juan Islands? Snatch up that Hotwire flight deal when you see a killer rate because it could be gone in a flash. And with flights as low as $79 right now, why wait?

San Juan Islands Flight Information
Destination airport
Seattle - Tacoma Intl.
Destination airport IATA code
SEA
Roundtrip price
$66

Last Minute Hotel Deals in San Juan Islands

Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (1,005 reviews)
yes

Reviewed on May 3, 2026

Get rates
Friday Harbor Suites
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.8/10 Excellent! (1,002 reviews)
Only a quick overnight, but they took dogs. Higher priced, and much nicer than what we needed, but would go back anytime. Spent a lot of time in Friday Harbor over decades, and never knew this place was there. Off season, so hard to guess what like in high season, but excellent experience.

Reviewed on May 4, 2026

Get rates
Earthbox Inn & Spa
Inn to the Woods B&B

Inn to the Woods B&B

3.5 out of 5
46 Elena Drive Friday Harbor WA
Stay at this B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Reuben Tarte Memorial Park and Mt. Grant Preserve are ...
9.8/10 Exceptional! (95 reviews)
Didn't use the hot tub. The breakfast was just what I ordered and it was excellent.

Reviewed on Mar 31, 2026

Get rates
Inn to the Woods B&B
Rosario Village

Rosario Village

2 out of 5
1400 Rosario Rd Eastsound WA
Book a stay at this beach hotel in Eastsound. Enjoy free WiFi, free parking, and an outdoor pool. Popular attractions Rosario Mansion Museum and Cascade Lake ...
7.6/10 Good! (103 reviews)
Address given on the website was incorrect. GFI outlet by the sink was defective. bedroom ceiling light was out. bedroom night stand light was out.

Reviewed on May 7, 2026

Get rates
Rosario Village
Snug Harbor Resort

Snug Harbor Resort

2.5 out of 5
1997 Mitchell Bay Rd Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff in our reviews. Popular attractions English ...
9.8/10 Exceptional! (505 reviews)
The cabins are amazing and have great views of the harbor. We woke up to see deer grazing and spent the evenings watching the seals swim around as the grey herons flew around. The cabins are clean and warm. They have a solid kitchen set up, just bring your own spices and oil to cook with. We used ...

Reviewed on May 8, 2026

Get rates
Snug Harbor Resort
The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and housekeeping. Popular attractions San Juan Islands Museum of Art and San Juan Historical ...
Get rates
The Orca Inn
Lopez Islander Resort

Lopez Islander Resort

3.5 out of 5
2864 Fisherman Bay Rd Lopez Island WA
Stay at this hotel in Lopez Island. Enjoy free WiFi, free parking, and an outdoor pool. Our guests praise the helpful staff in our reviews. Popular attractions ...
8.6/10 Excellent! (376 reviews)
There is little soundproofing between rooms and every step can be heard from the room upstairs and next to us. We could hear every step from above and also conversations that prevented us from getting much sleep. We were also woken early by guests in the room next door who entertained guests on the ...

Reviewed on May 5, 2026

Get rates
Lopez Islander Resort
Bird Rock Hotel

Bird Rock Hotel

2 out of 5
35 First Street Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Popular attractions Whale Museum and San Juan Islands Museum of Art are ...
8.8/10 Excellent! (366 reviews)
Such fast and helpful service, wonderful amenities, and over all an excellent and convenient experience!

Reviewed on Apr 27, 2026

Get rates
Bird Rock Hotel
See all 570 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Hotels With Free Airport Shuttle

Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.8/10 Excellent! (1,002 reviews)
Only a quick overnight, but they took dogs. Higher priced, and much nicer than what we needed, but would go back anytime. Spent a lot of time in Friday Harbor over decades, and never knew this place was there. Off season, so hard to guess what like in high season, but excellent experience.

Reviewed on May 4, 2026

Get rates
Earthbox Inn & Spa
See all 570 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.