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San Juan Islands

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San Juan Islands Flights as Low as $177

Prices found within past 7 days. Prices and availability subject to change. Additional terms may apply.

Delta
Delta
United
Alaska Airlines
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American Airlines
Alaska Airlines
United
Alaska Airlines
Alaska Airlines
Frontier Airlines
United
Frontier Airlines
Frontier Airlines
Frontier Airlines
American Airlines

Cheap Flights to San Juan Islands

Fall in love at first flight with your vacation to San Juan Islands by saving a ton of cash on your last-minute cheap flight. There’s no more scouring the internet for a good deal—book your flight to San Juan Islands on Hotwire, and you’ll be up, up, and on a getaway in no time.

Because once the wheels are down in San Juan Islands, the good times start rolling. So buckle up, you’re in for a fun ride.

Frequently Asked Questions About flights to San Juan Islands

Don’t waste your time on endless searches for cheap airline tickets oneway or roundtrip. We’ll have you on your way to San Juan Islands with a tiny bag of pretzels in your hand before you can say “tray tables in the upright position”—and for a ticket price that works for your vacay budget.

So all you have to worry about is where you’re headed after the SEA airport.

What is the cheapest month to fly to San Juan Islands?

Airline ticket prices fluctuate all the time, depending on the day of the week or the month of the year. The cheapest round trip flights to San Juan Islands are in June, but when you book your flight on Hotwire, savings are always in season.

How many airlines fly to San Juan Islands?

Variety is the spice of life, even when it comes to booking your next trip. Want options for airlines? You’ll find 16 to choose from for your flight to San Juan Islands.

What airport is best to fly into San Juan Islands?

When you’re planning your trip to San Juan Islands, convenience is the name of the game. Luckily, San Juan Islands Deer Harbor Seaplane Base Airport is nearby so you can deplane and get going on checking off everything on your San Juan Islands must-do list.

How much are flights to San Juan Islands?

Got very cheap flights on your vacation itinerary? When you book your airline tickets to San Juan Islands on Hotwire, you may just get what’s on your getaway wish list. With tickets as low as $177, you’ll have leftover cash for at least a magazine and a bottle of water at the airport book store.

How to get cheap flights to San Juan Islands?

The trick to saving a stack of cash on your flight to San Juan Islands? Snatch up that Hotwire flight deal when you see a killer rate because it could be gone in a flash. And with flights as low as $177 right now, why wait?

San Juan Islands Flight Information
Destination airport
Seattle - Tacoma Intl.
Destination airport IATA code
SEA
Roundtrip price
$266

Last Minute Hotel Deals in San Juan Islands

Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (1,002 reviews)
"I liked the room, the fireplace was nice. Parking and location were good."

Reviewed on May 20, 2026

Friday Harbor Suites
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.8/10 Excellent! (1,000 reviews)
"It was perfect. Lovely room w a large porch and all spotless from head to toe!"

Reviewed on May 18, 2026

Earthbox Inn & Spa
Rosario Village

Rosario Village

2 out of 5
1400 Rosario Rd Eastsound WA
Book a stay at this beach hotel in Eastsound. Enjoy free WiFi, free parking, and an outdoor pool. Popular attractions Rosario Mansion Museum and Cascade Lake ...
7.4/10 Good! (110 reviews)
"We loved the view. Quite, the room was clean."

Reviewed on May 19, 2026

Rosario Village
Inn to the Woods B&B

Inn to the Woods B&B

3.5 out of 5
46 Elena Drive Friday Harbor WA
Stay at this B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Reuben Tarte Memorial Park and Mt. Grant Preserve are ...
Inn to the Woods B&B
Snug Harbor Resort

Snug Harbor Resort

2.5 out of 5
1997 Mitchell Bay Rd Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff in our reviews. Popular attractions English ...
9.8/10 Exceptional! (512 reviews)
"We loved this place from the moment we pulled up. The grounds are so well kept and the view is beautiful! Our cabin was clean, cute and spacious. I was actually surprised on how supplied the kitchen was, and wished I would’ve planned accordingly to cook a few small meals there. The closest restaurant ..."

Reviewed on May 14, 2026

Snug Harbor Resort
The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and housekeeping. Popular attractions San Juan Islands Museum of Art and San Juan Historical ...
9.4/10 Exceptional! (3 reviews)
"Everything was awesome clean small but that’s what I expected and very nice staff"

Reviewed on May 16, 2026

The Orca Inn
Lopez Islander Resort

Lopez Islander Resort

3.5 out of 5
2864 Fisherman Bay Rd Lopez Island WA
Stay at this hotel in Lopez Island. Enjoy free WiFi, free parking, and an outdoor pool. Our guests praise the helpful staff in our reviews. Popular attractions ...
8.6/10 Excellent! (378 reviews)
"enjoyed our stay.....it was just what we were looking for. the views were amazing. sadly the beautiful pool was not open yet, and you had to call to have the hot tub opened for you. would definitely stay here again and recommend to others."

Reviewed on May 16, 2026

Lopez Islander Resort
Bird Rock Hotel

Bird Rock Hotel

2 out of 5
35 First Street Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Popular attractions Whale Museum and San Juan Islands Museum of Art are ...
8.8/10 Excellent! (368 reviews)
"Very nice and helpful staff! I love the location of this hotel it is so convenient."

Reviewed on May 15, 2026

Bird Rock Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Hotels With Free Airport Shuttle

Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.8/10 Excellent! (1,000 reviews)
"It was perfect. Lovely room w a large porch and all spotless from head to toe!"

Reviewed on May 18, 2026

Earthbox Inn & Spa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.