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San Juan Islands

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San Juan Islands Flights as Low as $108

Prices found within past 7 days. Prices and availability subject to change. Additional terms may apply.

Frontier Airlines
Fri, Oct 3 - Mon, Oct 6
PHX
Sky Harbor Intl.
PAE
Seattle Paine Field Intl. Airport
$108 Roundtrip, found 3 days ago
$108
Roundtrip
found 3 days ago
Select Frontier Airlines flight, departing Fri, Oct 3 from Sky Harbor Intl. to Seattle Paine Field Intl. Airport, returning Mon, Oct 6, priced at $108 found 3 days ago
Frontier Airlines
Fri, Sep 12 - Fri, Sep 12
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$141 Roundtrip, found 4 hours ago
$141
Roundtrip
found 4 hours ago
Select Frontier Airlines flight, departing Fri, Sep 12 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Fri, Sep 12, priced at $141 found 4 hours ago
Frontier Airlines
Fri, Oct 3 - Sun, Oct 12
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$142 Roundtrip, found 5 days ago
$142
Roundtrip
found 5 days ago
Select Frontier Airlines flight, departing Fri, Oct 3 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Sun, Oct 12, priced at $142 found 5 days ago
Alaska Airlines
Wed, Sep 10 - Mon, Sep 15
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$146 Roundtrip, found 6 days ago
$146
Roundtrip
found 6 days ago
Select Alaska Airlines flight, departing Wed, Sep 10 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Mon, Sep 15, priced at $146 found 6 days ago
Delta
Wed, Sep 10 - Mon, Sep 15
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$146 Roundtrip, found 6 days ago
$146
Roundtrip
found 6 days ago
Select Delta flight, departing Wed, Sep 10 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Mon, Sep 15, priced at $146 found 6 days ago
Frontier Airlines
Mon, Aug 18 - Thu, Aug 21
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$150 Roundtrip, found 1 day ago
$150
Roundtrip
found 1 day ago
Select Frontier Airlines flight, departing Mon, Aug 18 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Thu, Aug 21, priced at $150 found 1 day ago
Bargain Flight
Tue, Sep 16 - Tue, Sep 16
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$153 Roundtrip, found 1 day ago
$153
Roundtrip
found 1 day ago
Select Bargain Flight flight, departing Tue, Sep 16 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Tue, Sep 16, priced at $153 found 1 day ago
Frontier Airlines
Sun, Sep 21 - Thu, Sep 25
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$155 Roundtrip, found 3 days ago
$155
Roundtrip
found 3 days ago
Select Frontier Airlines flight, departing Sun, Sep 21 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Thu, Sep 25, priced at $155 found 3 days ago
Alaska Airlines
Tue, Sep 16 - Tue, Sep 16
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$156 Roundtrip, found 1 day ago
$156
Roundtrip
found 1 day ago
Select Alaska Airlines flight, departing Tue, Sep 16 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Tue, Sep 16, priced at $156 found 1 day ago
Delta
Tue, Sep 16 - Tue, Sep 16
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$156 Roundtrip, found 1 day ago
$156
Roundtrip
found 1 day ago
Select Delta flight, departing Tue, Sep 16 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Tue, Sep 16, priced at $156 found 1 day ago
Alaska Airlines
Sat, Aug 23 - Sat, Aug 23
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$157 Roundtrip, found 4 days ago
$157
Roundtrip
found 4 days ago
Select Alaska Airlines flight, departing Sat, Aug 23 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Sat, Aug 23, priced at $157 found 4 days ago
Hawaiian Airlines
Tue, Oct 14 - Sat, Oct 18
PHX
Sky Harbor Intl.
PAE
Seattle Paine Field Intl. Airport
$157 Roundtrip, found 4 days ago
$157
Roundtrip
found 4 days ago
Select Hawaiian Airlines flight, departing Tue, Oct 14 from Sky Harbor Intl. to Seattle Paine Field Intl. Airport, returning Sat, Oct 18, priced at $157 found 4 days ago
Alaska Airlines
Tue, Sep 30 - Wed, Oct 8
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$159 Roundtrip, found 5 days ago
$159
Roundtrip
found 5 days ago
Select Alaska Airlines flight, departing Tue, Sep 30 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Wed, Oct 8, priced at $159 found 5 days ago
American Airlines
Sat, Sep 13 - Wed, Sep 17
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$160 Roundtrip, found 4 days ago
$160
Roundtrip
found 4 days ago
Select American Airlines flight, departing Sat, Sep 13 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Wed, Sep 17, priced at $160 found 4 days ago
Frontier Airlines
Thu, Aug 21 - Fri, Aug 22
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$160 Roundtrip, found 4 days ago
$160
Roundtrip
found 4 days ago
Select Frontier Airlines flight, departing Thu, Aug 21 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Fri, Aug 22, priced at $160 found 4 days ago
Hawaiian Airlines
Wed, Aug 20 - Sat, Aug 30
PHX
Sky Harbor Intl.
BLI
Bellingham Intl.
$303 Roundtrip, found 5 days ago
$303
Roundtrip
found 5 days ago
Select Hawaiian Airlines flight, departing Wed, Aug 20 from Sky Harbor Intl. to Bellingham Intl., returning Sat, Aug 30, priced at $303 found 5 days ago

Cheap Flights to San Juan Islands

Fall in love at first flight with your vacation to San Juan Islands by saving a ton of cash on your last-minute cheap flight. There’s no more scouring the internet for a good deal—book your flight to San Juan Islands on Hotwire, and you’ll be up, up, and on a getaway in no time.

Because once the wheels are down in San Juan Islands, the good times start rolling. So buckle up, you’re in for a fun ride.

Frequently Asked Questions About flights to San Juan Islands

Don’t waste your time on endless searches for cheap airline tickets oneway or roundtrip. We’ll have you on your way to San Juan Islands with a tiny bag of pretzels in your hand before you can say “tray tables in the upright position”—and for a ticket price that works for your vacay budget.

So all you have to worry about is where you’re headed after the SEA airport.

What is the cheapest month to fly to San Juan Islands?

Airline ticket prices fluctuate all the time, depending on the day of the week or the month of the year. The cheapest round trip flights to San Juan Islands are in October, but when you book your flight on Hotwire, savings are always in season.

How many airlines fly to San Juan Islands?

Variety is the spice of life, even when it comes to booking your next trip. Want options for airlines? You’ll find 15 to choose from for your flight to San Juan Islands.

What airport is best to fly into San Juan Islands?

When you’re planning your trip to San Juan Islands, convenience is the name of the game. Luckily, San Juan Islands Deer Harbor Seaplane Base Airport is nearby so you can deplane and get going on checking off everything on your San Juan Islands must-do list.

How much are flights to San Juan Islands?

Got very cheap flights on your vacation itinerary? When you book your airline tickets to San Juan Islands on Hotwire, you may just get what’s on your getaway wish list. With tickets as low as $108, you’ll have leftover cash for at least a magazine and a bottle of water at the airport book store.

How to get cheap flights to San Juan Islands?

The trick to saving a stack of cash on your flight to San Juan Islands? Snatch up that Hotwire flight deal when you see a killer rate because it could be gone in a flash. And with flights as low as $108 right now, why wait?

San Juan Islands Flight Information
Destination airport
Seattle Paine Field Intl. Airport
Destination airport IATA code
PAE
Roundtrip price
$108

Last Minute Hotel Deals in San Juan Islands

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.8/10 Good! (1,001 reviews)
"It is a nice quiet place to stay. The rooms are very small, but clean. The staff was friendly and helpful, and there was ample parking. It's just a five minute walk from downtown Friday Harbor."

Reviewed on Aug 2, 2025

Get rates
The Orca Inn
Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street, Friday Harbor, WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.4/10 Very Good! (1,004 reviews)
"We were really happy that the suite had separate rooms with very comfy queen beds. I like to watch TV but husband doesn't."

Reviewed on Jul 31, 2025

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Friday Harbor Suites
Inn to the Woods B&B

Inn to the Woods B&B

3.5 out of 5
46 Elena Drive, Friday Harbor, WA
Stay at this 3.5-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Reuben Tarte Memorial Park and Mt. Grant Preserve ...
9.6/10 Exceptional! (83 reviews)
"Very kind staff. Our trip was for our honeymoon, so the staff decorated our room with rose petals, and they gave us complimentary mimosas and a bottle of wine. Quick access to Friday and Roche Harbor."

Reviewed on Jul 23, 2025

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Inn to the Woods B&B
Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (949 reviews)
"Excellent location near all of Friday Harbor dining/shopping/excursions. It’s about 4 blocks from the ferry terminal (up a gradual hill). The separate toilet/shower area of the bathroom is really small, so not great if you are a large person. Otherwise, very clean, fridge and microwave, and nice ..."

Reviewed on Aug 2, 2025

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Earthbox Inn & Spa
Outlook Inn

Outlook Inn

3 out of 5
171 Main St, Eastsound, WA
Stay at this 3-star hotel in Eastsound. Enjoy free WiFi, 2 meeting rooms, and daily housekeeping. Our guests praise the helpful staff in our reviews. Popular ...
9/10 Wonderful! (484 reviews)
"We had one of the 5 rooms on the water. Unbelievable views!"

Reviewed on Jul 30, 2025

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Outlook Inn
Lopez Islander Resort

Lopez Islander Resort

3.5 out of 5
2864 Fisherman Bay Rd, Lopez Island, WA
Stay at this 3.5-star hotel in Lopez Island. Enjoy free WiFi, free parking, and an outdoor pool. Our guests praise the helpful staff in our reviews. Popular ...
8.4/10 Very Good! (340 reviews)
"Great location"

Reviewed on Jul 15, 2025

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Lopez Islander Resort
Deer Harbor Inn

Deer Harbor Inn

3 out of 5
33 Inn Lane, Deer Harbor, WA
Stay at this 3-star hotel in Deer Harbor. Enjoy free WiFi, free parking, and a garden. Popular attractions Skull Island State Park and West Sound Marina are ...
8.2/10 Very Good! (182 reviews)
"Nice property close to smokehouse. And close to the harbor for kayaking or any other boating. Nice big property to wander around. The locks were quite ingenious with your key code to your telephone number."

Reviewed on Jul 31, 2025

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Deer Harbor Inn
Rosario Village

Rosario Village

2 out of 5
1400 Rosario Rd, Eastsound, WA
Stay at this hotel in Eastsound. Enjoy free WiFi, free parking, and a private beach. Popular attractions Rosario Mansion Museum and Cascade Lake are located ...
7.2/10 Good! (64 reviews)
"Great stay nice room view all good."

Reviewed on Jul 17, 2025

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Rosario Village
See all 592 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Hotels With Free Airport Shuttle

Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (949 reviews)
"Excellent location near all of Friday Harbor dining/shopping/excursions. It’s about 4 blocks from the ferry terminal (up a gradual hill). The separate toilet/shower area of the bathroom is really small, so not great if you are a large person. Otherwise, very clean, fridge and microwave, and nice ..."

Reviewed on Aug 2, 2025

Get rates
Earthbox Inn & Spa
See all 592 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.