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San Juan Islands

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San Juan Islands Flights as Low as $135

Prices found within past 7 days. Prices and availability subject to change. Additional terms may apply.

Frontier Airlines
Wed, Feb 12 - Fri, Feb 21
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$135 Roundtrip, found 4 days ago
$135
Roundtrip
found 4 days ago
Select Frontier Airlines flight, departing Wed, Feb 12 from San Francisco Intl. to Seattle - Tacoma Intl., returning Fri, Feb 21, priced at $135 found 4 days ago
Frontier Airlines
Mon, Mar 10 - Mon, Mar 17
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$135 Roundtrip, found 3 days ago
$135
Roundtrip
found 3 days ago
Select Frontier Airlines flight, departing Mon, Mar 10 from San Francisco Intl. to Seattle - Tacoma Intl., returning Mon, Mar 17, priced at $135 found 3 days ago
Frontier Airlines
Wed, Feb 26 - Fri, Feb 28
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$141 Roundtrip, found 3 hours ago
$141
Roundtrip
found 3 hours ago
Select Frontier Airlines flight, departing Wed, Feb 26 from San Francisco Intl. to Seattle - Tacoma Intl., returning Fri, Feb 28, priced at $141 found 3 hours ago
Frontier Airlines
Fri, Mar 21 - Mon, Mar 24
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$144 Roundtrip, found 4 days ago
$144
Roundtrip
found 4 days ago
Select Frontier Airlines flight, departing Fri, Mar 21 from San Francisco Intl. to Seattle - Tacoma Intl., returning Mon, Mar 24, priced at $144 found 4 days ago
Frontier Airlines
Mon, Mar 10 - Mon, Mar 17
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$150 Roundtrip, found 3 days ago
$150
Roundtrip
found 3 days ago
Select Frontier Airlines flight, departing Mon, Mar 10 from San Francisco Intl. to Seattle - Tacoma Intl., returning Mon, Mar 17, priced at $150 found 3 days ago
Frontier Airlines
Fri, Feb 21 - Fri, Feb 28
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$151 Roundtrip, found 4 days ago
$151
Roundtrip
found 4 days ago
Select Frontier Airlines flight, departing Fri, Feb 21 from San Francisco Intl. to Seattle - Tacoma Intl., returning Fri, Feb 28, priced at $151 found 4 days ago
Hawaiian Airlines
Wed, Mar 12 - Wed, Mar 12
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$151 Roundtrip, found 3 days ago
$151
Roundtrip
found 3 days ago
Select Hawaiian Airlines flight, departing Wed, Mar 12 from San Francisco Intl. to Seattle - Tacoma Intl., returning Wed, Mar 12, priced at $151 found 3 days ago
Alaska Airlines
Wed, Mar 12 - Wed, Mar 12
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$151 Roundtrip, found 3 days ago
$151
Roundtrip
found 3 days ago
Select Alaska Airlines flight, departing Wed, Mar 12 from San Francisco Intl. to Seattle - Tacoma Intl., returning Wed, Mar 12, priced at $151 found 3 days ago
Frontier Airlines
Fri, Mar 21 - Mon, Mar 24
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$153 Roundtrip, found 4 days ago
$153
Roundtrip
found 4 days ago
Select Frontier Airlines flight, departing Fri, Mar 21 from San Francisco Intl. to Seattle - Tacoma Intl., returning Mon, Mar 24, priced at $153 found 4 days ago
Alaska Airlines
Tue, Mar 18 - Tue, Mar 25
SFO
San Francisco Intl.
PAE
Seattle Paine Field Intl. Airport
$157 Roundtrip, found 3 hours ago
$157
Roundtrip
found 3 hours ago
Select Alaska Airlines flight, departing Tue, Mar 18 from San Francisco Intl. to Seattle Paine Field Intl. Airport, returning Tue, Mar 25, priced at $157 found 3 hours ago
Hawaiian Airlines
Tue, Apr 8 - Wed, Apr 9
SFO
San Francisco Intl.
PAE
Seattle Paine Field Intl. Airport
$157 Roundtrip, found 4 days ago
$157
Roundtrip
found 4 days ago
Select Hawaiian Airlines flight, departing Tue, Apr 8 from San Francisco Intl. to Seattle Paine Field Intl. Airport, returning Wed, Apr 9, priced at $157 found 4 days ago
United
Wed, Mar 12 - Wed, Mar 12
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$157 Roundtrip, found 3 days ago
$157
Roundtrip
found 3 days ago
Select United flight, departing Wed, Mar 12 from San Francisco Intl. to Seattle - Tacoma Intl., returning Wed, Mar 12, priced at $157 found 3 days ago
Delta
Wed, Mar 12 - Wed, Mar 12
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$158 Roundtrip, found 3 days ago
$158
Roundtrip
found 3 days ago
Select Delta flight, departing Wed, Mar 12 from San Francisco Intl. to Seattle - Tacoma Intl., returning Wed, Mar 12, priced at $158 found 3 days ago
Frontier Airlines
Fri, Mar 21 - Mon, Mar 24
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$158 Roundtrip, found 4 days ago
$158
Roundtrip
found 4 days ago
Select Frontier Airlines flight, departing Fri, Mar 21 from San Francisco Intl. to Seattle - Tacoma Intl., returning Mon, Mar 24, priced at $158 found 4 days ago
Delta
Tue, Apr 1 - Tue, Apr 8
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$160 Roundtrip, found 4 days ago
$160
Roundtrip
found 4 days ago
Select Delta flight, departing Tue, Apr 1 from San Francisco Intl. to Seattle - Tacoma Intl., returning Tue, Apr 8, priced at $160 found 4 days ago
American Airlines
Wed, Mar 12 - Wed, Mar 12
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$221 Roundtrip, found 3 days ago
$221
Roundtrip
found 3 days ago
Select American Airlines flight, departing Wed, Mar 12 from San Francisco Intl. to Seattle - Tacoma Intl., returning Wed, Mar 12, priced at $221 found 3 days ago

Cheap Flights to San Juan Islands

Fall in love at first flight with your vacation to San Juan Islands by saving a ton of cash on your last-minute cheap flight. There’s no more scouring the internet for a good deal—book your flight to San Juan Islands on Hotwire, and you’ll be up, up, and on a getaway in no time.

Because once the wheels are down in San Juan Islands, the good times start rolling. So buckle up, you’re in for a fun ride.

Frequently Asked Questions About flights to San Juan Islands

Don’t waste your time on endless searches for cheap airline tickets oneway or roundtrip. We’ll have you on your way to San Juan Islands with a tiny bag of pretzels in your hand before you can say “tray tables in the upright position”—and for a ticket price that works for your vacay budget.

So all you have to worry about is where you’re headed after the SEA airport.

What is the cheapest month to fly to San Juan Islands?

Airline ticket prices fluctuate all the time, depending on the day of the week or the month of the year. The cheapest round trip flights to San Juan Islands are in February, but when you book your flight on Hotwire, savings are always in season.

How many airlines fly to San Juan Islands?

Variety is the spice of life, even when it comes to booking your next trip. Want options for airlines? You’ll find 16 to choose from for your flight to San Juan Islands.

What airport is best to fly into San Juan Islands?

When you’re planning your trip to San Juan Islands, convenience is the name of the game. Luckily, San Juan Islands Deer Harbor Seaplane Base Airport is nearby so you can deplane and get going on checking off everything on your San Juan Islands must-do list.

How much are flights to San Juan Islands?

Got very cheap flights on your vacation itinerary? When you book your airline tickets to San Juan Islands on Hotwire, you may just get what’s on your getaway wish list. With tickets as low as $135, you’ll have leftover cash for at least a magazine and a bottle of water at the airport book store.

How to get cheap flights to San Juan Islands?

The trick to saving a stack of cash on your flight to San Juan Islands? Snatch up that Hotwire flight deal when you see a killer rate because it could be gone in a flash. And with flights as low as $135 right now, why wait?

San Juan Islands Flight Information
Destination airport
Seattle - Tacoma Intl.
Destination airport IATA code
SEA
Roundtrip price
$160

Last Minute Hotel Deals in San Juan Islands

Snug Harbor Resort
Snug Harbor Resort
2.5 out of 5
1997 Mitchell Bay Rd, Friday Harbor, WA
The price is $253 per night from Feb 12 to Feb 13
$253
includes taxes & fees
Feb 12 - Feb 13
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff in our reviews. Popular attractions English ...
9.8/10 Exceptional! (345 reviews)
"Unit could have been slightly cleaner and there was some wear and tear, but overall it was a great experience. There was a big gap under the front door that caused a decent cold draft (we went in winter). However, the property is incredible, would go back."

Reviewed on Jan 30, 2025

Snug Harbor Resort
The Orca Inn
The Orca Inn
2 out of 5
770 Mullis St., Friday Harbor, WA
The price is $111 per night from Feb 12 to Feb 13
$111
includes taxes & fees
Feb 12 - Feb 13
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (941 reviews)
Great stay at the Orca Inn!
"Good stay. Rooms are clean with basic equipment. Hotel staff were very friendly and accommodating. The front office manager Laura was very nice and helpful during our stay. Will definitely stay there again in future."

Reviewed on Dec 23, 2024

The Orca Inn
Inn to the Woods B&B
Inn to the Woods B&B
3.5 out of 5
46 Elena Drive, Friday Harbor, WA
Stay at this 3.5-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Reuben Tarte Memorial Park and Mt. Grant Preserve ...
9.6/10 Exceptional! (77 reviews)
"Very comfortable and cozy. Great host. Good communication and very welcoming. Access is a bit difficult if you have mobility issues but they were very accommodating to allow us to use a different access"

Reviewed on Nov 11, 2024

Get rates
Inn to the Woods B&B
Outlook Inn on Orcas Island
Outlook Inn on Orcas Island
3 out of 5
171 Main St, Eastsound, WA
The price is $323 per night from Feb 12 to Feb 13
$323
includes taxes & fees
Feb 12 - Feb 13
Stay at this 3-star hotel in Eastsound. Enjoy free WiFi, 2 meeting rooms, and daily housekeeping. Our guests praise the helpful staff in our reviews. Popular ...
9/10 Wonderful! (457 reviews)
"Great location, easy check-in and nice room."

Reviewed on Jan 4, 2025

Outlook Inn on Orcas Island
Friday Harbor Suites
Friday Harbor Suites
2.5 out of 5
680 Spring Street, Friday Harbor, WA
The price is $221 per night from Feb 12 to Feb 13
$221
includes taxes & fees
Feb 12 - Feb 13
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.2/10 Very Good! (950 reviews)
"We ended up not being able to go on my daughter's "Sweet 16" trip due to illness. Friday Harbor Suites worked with Expedia to cancel our reservation and refund our trip. I am extremely grateful to them!! They took a very sad/hard situation and made it bearable! I hope to reschedule our trip ..."

Reviewed on Feb 2, 2025

Friday Harbor Suites
Roche Harbor Resort
Roche Harbor Resort
3 out of 5
248 Reuben Memorial Dr, Friday Harbor, WA
The price is $199 per night from Feb 23 to Feb 24
$199
includes taxes & fees
Feb 23 - Feb 24
Stay at this 3-star spa resort in Friday Harbor. Enjoy an outdoor pool, a full-service spa, and 3 restaurants. Popular attractions Roche Harbor Marina and San ...
9/10 Wonderful! (364 reviews)
"Amazing"

Reviewed on Jan 20, 2025

Roche Harbor Resort
Earthbox Inn & Spa
Earthbox Inn & Spa
2.5 out of 5
410 Spring Street, Friday Harbor, WA
The price is $227 per night from Feb 12 to Feb 13
$227
includes taxes & fees
Feb 12 - Feb 13
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (879 reviews)
Earth Box Inn
"Neat hotel. Set up like a motor lodge but don't let that fool you. Room was clean. Water was hot. Parking easy. I had my dog with me..the dog area was decent, but it’s very dark out there. Maybe a motion light or something would be good. I was there Dec 24-25, the island was very quiet. 5 min walk ..."

Reviewed on Jan 2, 2025

Earthbox Inn & Spa
Lopez Islander Resort
Lopez Islander Resort
3.5 out of 5
2864 Fisherman Bay Rd, Lopez Island, WA
The price is $176 per night from Feb 13 to Feb 14
$176
includes taxes & fees
Feb 13 - Feb 14
Stay at this 3.5-star hotel in Lopez Island. Enjoy free WiFi, free parking, and an outdoor pool. Our guests praise the helpful staff in our reviews. Popular ...
8.4/10 Very Good! (315 reviews)
"Older property."

Reviewed on Jan 19, 2025

Lopez Islander Resort
See all 545 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Hotels With Free Airport Shuttle

Earthbox Inn & Spa
Earthbox Inn & Spa
2.5 out of 5
410 Spring Street, Friday Harbor, WA
The price is $227 per night from Feb 12 to Feb 13
$227
includes taxes & fees
Feb 12 - Feb 13
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (879 reviews)
Earth Box Inn
"Neat hotel. Set up like a motor lodge but don't let that fool you. Room was clean. Water was hot. Parking easy. I had my dog with me..the dog area was decent, but it’s very dark out there. Maybe a motion light or something would be good. I was there Dec 24-25, the island was very quiet. 5 min walk ..."

Reviewed on Jan 2, 2025

Earthbox Inn & Spa
See all 545 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.