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San Juan Islands

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San Juan Islands Flights as Low as $136

Prices found within past 7 days. Prices and availability subject to change. Additional terms may apply.

Frontier Airlines
Fri, Nov 13 - Mon, Nov 16
LAS
Harry Reid Intl.
SEA
Seattle - Tacoma Intl.
$136 Roundtrip, found 1 day ago
$136
Roundtrip
found 1 day ago
Select Frontier Airlines flight, departing Fri, Nov 13 from Harry Reid Intl. to Seattle - Tacoma Intl., returning Mon, Nov 16, priced at $136 found 1 day ago
Frontier Airlines
Thu, Nov 12 - Mon, Nov 16
LAS
Harry Reid Intl.
SEA
Seattle - Tacoma Intl.
$142 Roundtrip, found 12 hours ago
$142
Roundtrip
found 12 hours ago
Select Frontier Airlines flight, departing Thu, Nov 12 from Harry Reid Intl. to Seattle - Tacoma Intl., returning Mon, Nov 16, priced at $142 found 12 hours ago
Frontier Airlines
Thu, Nov 5 - Mon, Nov 16
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$147 Roundtrip, found 9 hours ago
$147
Roundtrip
found 9 hours ago
Select Frontier Airlines flight, departing Thu, Nov 5 from San Francisco Intl. to Seattle - Tacoma Intl., returning Mon, Nov 16, priced at $147 found 9 hours ago
Frontier Airlines
Thu, Oct 29 - Tue, Nov 10
LAS
Harry Reid Intl.
SEA
Seattle - Tacoma Intl.
$148 Roundtrip, found 17 hours ago
$148
Roundtrip
found 17 hours ago
Select Frontier Airlines flight, departing Thu, Oct 29 from Harry Reid Intl. to Seattle - Tacoma Intl., returning Tue, Nov 10, priced at $148 found 17 hours ago
Frontier Airlines
Thu, Nov 12 - Mon, Nov 16
LAS
Harry Reid Intl.
SEA
Seattle - Tacoma Intl.
$151 Roundtrip, found 12 hours ago
$151
Roundtrip
found 12 hours ago
Select Frontier Airlines flight, departing Thu, Nov 12 from Harry Reid Intl. to Seattle - Tacoma Intl., returning Mon, Nov 16, priced at $151 found 12 hours ago
Bargain Flight
Mon, Dec 14 - Mon, Dec 14
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$151 Roundtrip, found 22 hours ago
$151
Roundtrip
found 22 hours ago
Select Bargain Flight flight, departing Mon, Dec 14 from San Francisco Intl. to Seattle - Tacoma Intl., returning Mon, Dec 14, priced at $151 found 22 hours ago
Delta
Mon, Dec 14 - Mon, Dec 14
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$152 Roundtrip, found 22 hours ago
$152
Roundtrip
found 22 hours ago
Select Delta flight, departing Mon, Dec 14 from San Francisco Intl. to Seattle - Tacoma Intl., returning Mon, Dec 14, priced at $152 found 22 hours ago
Alaska Airlines
Thu, Nov 5 - Mon, Nov 16
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$152 Roundtrip, found 9 hours ago
$152
Roundtrip
found 9 hours ago
Select Alaska Airlines flight, departing Thu, Nov 5 from San Francisco Intl. to Seattle - Tacoma Intl., returning Mon, Nov 16, priced at $152 found 9 hours ago
Alaska Airlines
Wed, Nov 11 - Wed, Nov 11
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$154 Roundtrip, found 17 hours ago
$154
Roundtrip
found 17 hours ago
Select Alaska Airlines flight, departing Wed, Nov 11 from San Francisco Intl. to Seattle - Tacoma Intl., returning Wed, Nov 11, priced at $154 found 17 hours ago
Frontier Airlines
Thu, Oct 29 - Tue, Nov 10
LAS
Harry Reid Intl.
SEA
Seattle - Tacoma Intl.
$157 Roundtrip, found 17 hours ago
$157
Roundtrip
found 17 hours ago
Select Frontier Airlines flight, departing Thu, Oct 29 from Harry Reid Intl. to Seattle - Tacoma Intl., returning Tue, Nov 10, priced at $157 found 17 hours ago
United
Mon, Dec 14 - Mon, Dec 14
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$157 Roundtrip, found 22 hours ago
$157
Roundtrip
found 22 hours ago
Select United flight, departing Mon, Dec 14 from San Francisco Intl. to Seattle - Tacoma Intl., returning Mon, Dec 14, priced at $157 found 22 hours ago
Alaska Airlines
Wed, Oct 21 - Thu, Nov 19
SFO
San Francisco Intl.
PAE
Seattle Paine Field Intl. Airport
$159 Roundtrip, found 22 hours ago
$159
Roundtrip
found 22 hours ago
Select Alaska Airlines flight, departing Wed, Oct 21 from San Francisco Intl. to Seattle Paine Field Intl. Airport, returning Thu, Nov 19, priced at $159 found 22 hours ago
Southwest Airlines
Sat, Oct 24 - Tue, Oct 27
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$179 Roundtrip, found 1 hour ago
$179
Roundtrip
found 1 hour ago
Select Southwest Airlines flight, departing Sat, Oct 24 from San Francisco Intl. to Seattle - Tacoma Intl., returning Tue, Oct 27, priced at $179 found 1 hour ago
American Airlines
Sat, Oct 24 - Tue, Oct 27
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$179 Roundtrip, found 1 hour ago
$179
Roundtrip
found 1 hour ago
Select American Airlines flight, departing Sat, Oct 24 from San Francisco Intl. to Seattle - Tacoma Intl., returning Tue, Oct 27, priced at $179 found 1 hour ago
Alaska Airlines
Thu, Nov 12 - Mon, Nov 16
LAS
Harry Reid Intl.
PAE
Seattle Paine Field Intl. Airport
$241 Roundtrip, found 12 hours ago
$241
Roundtrip
found 12 hours ago
Select Alaska Airlines flight, departing Thu, Nov 12 from Harry Reid Intl. to Seattle Paine Field Intl. Airport, returning Mon, Nov 16, priced at $241 found 12 hours ago
Allegiant Air
Tue, Nov 24 - Wed, Dec 2
LAS
Harry Reid Intl.
BLI
Bellingham Intl.
$316 Roundtrip, found 4 days ago
$316
Roundtrip
found 4 days ago
Select Allegiant Air flight, departing Tue, Nov 24 from Harry Reid Intl. to Bellingham Intl., returning Wed, Dec 2, priced at $316 found 4 days ago

Cheap Flights to San Juan Islands

Fall in love at first flight with your vacation to San Juan Islands by saving a ton of cash on your last-minute cheap flight. There’s no more scouring the internet for a good deal—book your flight to San Juan Islands on Hotwire, and you’ll be up, up, and on a getaway in no time.

Because once the wheels are down in San Juan Islands, the good times start rolling. So buckle up, you’re in for a fun ride.

Frequently Asked Questions About flights to San Juan Islands

Don’t waste your time on endless searches for cheap airline tickets oneway or roundtrip. We’ll have you on your way to San Juan Islands with a tiny bag of pretzels in your hand before you can say “tray tables in the upright position”—and for a ticket price that works for your vacay budget.

So all you have to worry about is where you’re headed after the SEA airport.

What is the cheapest month to fly to San Juan Islands?

Airline ticket prices fluctuate all the time, depending on the day of the week or the month of the year. The cheapest round trip flights to San Juan Islands are in November, but when you book your flight on Hotwire, savings are always in season.

How many airlines fly to San Juan Islands?

Variety is the spice of life, even when it comes to booking your next trip. Want options for airlines? You’ll find 15 to choose from for your flight to San Juan Islands.

What airport is best to fly into San Juan Islands?

When you’re planning your trip to San Juan Islands, convenience is the name of the game. Luckily, San Juan Islands Deer Harbor Seaplane Base Airport is nearby so you can deplane and get going on checking off everything on your San Juan Islands must-do list.

How much are flights to San Juan Islands?

Got very cheap flights on your vacation itinerary? When you book your airline tickets to San Juan Islands on Hotwire, you may just get what’s on your getaway wish list. With tickets as low as $136, you’ll have leftover cash for at least a magazine and a bottle of water at the airport book store.

How to get cheap flights to San Juan Islands?

The trick to saving a stack of cash on your flight to San Juan Islands? Snatch up that Hotwire flight deal when you see a killer rate because it could be gone in a flash. And with flights as low as $136 right now, why wait?

San Juan Islands Flight Information
Destination airport
Seattle - Tacoma Intl.
Destination airport IATA code
SEA
Roundtrip price
$102

Last Minute Hotel Deals in San Juan Islands

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and housekeeping. Popular attractions San Juan Islands Museum of Art and San Juan Historical ...
8.2/10 Very Good! (162 reviews)
"Good location, small rooms"

Reviewed on Sep 28, 2026

Get rates
The Orca Inn
Inn to the Woods B&B

Inn to the Woods B&B

3.5 out of 5
46 Elena Drive Friday Harbor WA
Stay at this B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Reuben Tarte Memorial Park and Mt. Grant Preserve are ...
9.8/10 Exceptional! (109 reviews)
"It's a very charming property. My bed was very comfortable, and I had a private hot tub on the patio with a view of Egg Lake! Breakfast was delicious and thoughtful. There are two adorable dogs on the property which made me very happy!"

Reviewed on Sep 24, 2026

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Inn to the Woods B&B
Rosario Resort

Rosario Resort

2 out of 5
1624 Rosario Rd Eastsound WA
Book a stay at this beach hotel in Eastsound. Enjoy free WiFi, free parking, and an outdoor pool. Popular attractions Rosario Mansion Museum and Cascade Lake ...
Get rates
Rosario Resort
Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (1,004 reviews)
"Clean room and great staff"

Reviewed on Sep 26, 2026

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Friday Harbor Suites
Lopez Islander Resort

Lopez Islander Resort

3.5 out of 5
2864 Fisherman Bay Rd Lopez Island WA
Stay at this hotel in Lopez Island. Enjoy free WiFi, free parking, and an outdoor pool. Our guests praise the helpful staff in our reviews. Popular attractions ...
8.6/10 Excellent! (426 reviews)
"Clean room Staff Bar"

Reviewed on Sep 26, 2026

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Lopez Islander Resort
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.8/10 Excellent! (1,001 reviews)
"Well appointed spa and dog friendly hotel within walking distance to town and the Friday Harbor ferry terminal. Quiet clean rooms set back from the main street, very comfortable beds, and nice amenities. Staff and manager were very friendly and helpful with arrangements. I would definitely stay here ..."

Reviewed on Sep 26, 2026

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Earthbox Inn & Spa
Snug Harbor Resort

Snug Harbor Resort

2.5 out of 5
1997 Mitchell Bay Rd Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff in our reviews. Popular attractions English ...
9.8/10 Exceptional! (542 reviews)
"This is a beautiful property, which makes it disappointing that the service left such a different impression. We arrived at 3:30 p.m., tired from a long day, and asked if we could check in before the posted 4:00 time. Nila at the front desk said the rooms had not been released by the cleaning crew. ..."

Reviewed on Sep 25, 2026

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Snug Harbor Resort
Discovery Inn

Discovery Inn

2 out of 5
1016 Guard St. Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and slippers. Popular attractions San Juan Historical Society and Museum and San Juan Islands ...
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Discovery Inn
See all 576 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Hotels With Free Airport Shuttle

Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.8/10 Excellent! (1,001 reviews)
"Well appointed spa and dog friendly hotel within walking distance to town and the Friday Harbor ferry terminal. Quiet clean rooms set back from the main street, very comfortable beds, and nice amenities. Staff and manager were very friendly and helpful with arrangements. I would definitely stay here ..."

Reviewed on Sep 26, 2026

Get rates
Earthbox Inn & Spa
See all 576 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.