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San Juan Islands

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San Juan Islands Flights as Low as $100

Prices found within past 7 days. Prices and availability subject to change. Additional terms may apply.

Frontier Airlines
Sat, Jun 14 - Wed, Jun 18
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$100 Roundtrip, found 2 days ago
$100
Roundtrip
found 2 days ago
Select Frontier Airlines flight, departing Sat, Jun 14 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Wed, Jun 18, priced at $100 found 2 days ago
Frontier Airlines
Tue, May 27 - Sat, May 31
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$103 Roundtrip, found 23 hours ago
$103
Roundtrip
found 23 hours ago
Select Frontier Airlines flight, departing Tue, May 27 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Sat, May 31, priced at $103 found 23 hours ago
Frontier Airlines
Wed, Jun 25 - Wed, Jul 2
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$105 Roundtrip, found 15 hours ago
$105
Roundtrip
found 15 hours ago
Select Frontier Airlines flight, departing Wed, Jun 25 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Wed, Jul 2, priced at $105 found 15 hours ago
Frontier Airlines
Thu, May 22 - Tue, May 27
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$106 Roundtrip, found 1 day ago
$106
Roundtrip
found 1 day ago
Select Frontier Airlines flight, departing Thu, May 22 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Tue, May 27, priced at $106 found 1 day ago
Frontier Airlines
Tue, May 27 - Thu, May 29
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$108 Roundtrip, found 2 days ago
$108
Roundtrip
found 2 days ago
Select Frontier Airlines flight, departing Tue, May 27 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Thu, May 29, priced at $108 found 2 days ago
Frontier Airlines
Wed, Jun 25 - Fri, Jul 4
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$110 Roundtrip, found 15 hours ago
$110
Roundtrip
found 15 hours ago
Select Frontier Airlines flight, departing Wed, Jun 25 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Fri, Jul 4, priced at $110 found 15 hours ago
Frontier Airlines
Sun, May 25 - Tue, May 27
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$111 Roundtrip, found 2 days ago
$111
Roundtrip
found 2 days ago
Select Frontier Airlines flight, departing Sun, May 25 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Tue, May 27, priced at $111 found 2 days ago
Frontier Airlines
Fri, Jul 4 - Fri, Jul 11
PHX
Sky Harbor Intl.
PAE
Seattle Paine Field Intl. Airport
$118 Roundtrip, found 21 hours ago
$118
Roundtrip
found 21 hours ago
Select Frontier Airlines flight, departing Fri, Jul 4 from Sky Harbor Intl. to Seattle Paine Field Intl. Airport, returning Fri, Jul 11, priced at $118 found 21 hours ago
Spirit Airlines
Thu, May 29 - Sun, Jun 1
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$149 Roundtrip, found 1 day ago
$149
Roundtrip
found 1 day ago
Select Spirit Airlines flight, departing Thu, May 29 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Sun, Jun 1, priced at $149 found 1 day ago
Delta
Wed, Aug 13 - Wed, Aug 13
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$154 Roundtrip, found 14 hours ago
$154
Roundtrip
found 14 hours ago
Select Delta flight, departing Wed, Aug 13 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Wed, Aug 13, priced at $154 found 14 hours ago
Bargain Flight
Tue, Aug 5 - Tue, Aug 19
PHX
Sky Harbor Intl.
PAE
Seattle Paine Field Intl. Airport
$159 Roundtrip, found 5 days ago
$159
Roundtrip
found 5 days ago
Select Bargain Flight flight, departing Tue, Aug 5 from Sky Harbor Intl. to Seattle Paine Field Intl. Airport, returning Tue, Aug 19, priced at $159 found 5 days ago
United
Tue, May 27 - Sat, May 31
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$160 Roundtrip, found 23 hours ago
$160
Roundtrip
found 23 hours ago
Select United flight, departing Tue, May 27 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Sat, May 31, priced at $160 found 23 hours ago
Hawaiian Airlines
Tue, Jun 17 - Tue, Jun 24
PHX
Sky Harbor Intl.
PAE
Seattle Paine Field Intl. Airport
$161 Roundtrip, found 3 days ago
$161
Roundtrip
found 3 days ago
Select Hawaiian Airlines flight, departing Tue, Jun 17 from Sky Harbor Intl. to Seattle Paine Field Intl. Airport, returning Tue, Jun 24, priced at $161 found 3 days ago
American Airlines
Tue, Jun 3 - Sat, Jun 7
PHX
Sky Harbor Intl.
SEA
Seattle - Tacoma Intl.
$166 Roundtrip, found 1 day ago
$166
Roundtrip
found 1 day ago
Select American Airlines flight, departing Tue, Jun 3 from Sky Harbor Intl. to Seattle - Tacoma Intl., returning Sat, Jun 7, priced at $166 found 1 day ago
Alaska Airlines
Thu, May 29 - Sun, Jun 1
LAX
Los Angeles Intl.
PAE
Seattle Paine Field Intl. Airport
$180 Roundtrip, found 1 day ago
$180
Roundtrip
found 1 day ago
Select Alaska Airlines flight, departing Thu, May 29 from Los Angeles Intl. to Seattle Paine Field Intl. Airport, returning Sun, Jun 1, priced at $180 found 1 day ago
Hawaiian Airlines
Sat, Jun 7 - Tue, Jun 10
PHX
Sky Harbor Intl.
BLI
Bellingham Intl.
$209 Roundtrip, found 5 days ago
$209
Roundtrip
found 5 days ago
Select Hawaiian Airlines flight, departing Sat, Jun 7 from Sky Harbor Intl. to Bellingham Intl., returning Tue, Jun 10, priced at $209 found 5 days ago

Cheap Flights to San Juan Islands

Fall in love at first flight with your vacation to San Juan Islands by saving a ton of cash on your last-minute cheap flight. There’s no more scouring the internet for a good deal—book your flight to San Juan Islands on Hotwire, and you’ll be up, up, and on a getaway in no time.

Because once the wheels are down in San Juan Islands, the good times start rolling. So buckle up, you’re in for a fun ride.

Frequently Asked Questions About flights to San Juan Islands

Don’t waste your time on endless searches for cheap airline tickets oneway or roundtrip. We’ll have you on your way to San Juan Islands with a tiny bag of pretzels in your hand before you can say “tray tables in the upright position”—and for a ticket price that works for your vacay budget.

So all you have to worry about is where you’re headed after the SEA airport.

What is the cheapest month to fly to San Juan Islands?

Airline ticket prices fluctuate all the time, depending on the day of the week or the month of the year. The cheapest round trip flights to San Juan Islands are in June, but when you book your flight on Hotwire, savings are always in season.

How many airlines fly to San Juan Islands?

Variety is the spice of life, even when it comes to booking your next trip. Want options for airlines? You’ll find 15 to choose from for your flight to San Juan Islands.

What airport is best to fly into San Juan Islands?

When you’re planning your trip to San Juan Islands, convenience is the name of the game. Luckily, San Juan Islands Deer Harbor Seaplane Base Airport is nearby so you can deplane and get going on checking off everything on your San Juan Islands must-do list.

How much are flights to San Juan Islands?

Got very cheap flights on your vacation itinerary? When you book your airline tickets to San Juan Islands on Hotwire, you may just get what’s on your getaway wish list. With tickets as low as $100, you’ll have leftover cash for at least a magazine and a bottle of water at the airport book store.

How to get cheap flights to San Juan Islands?

The trick to saving a stack of cash on your flight to San Juan Islands? Snatch up that Hotwire flight deal when you see a killer rate because it could be gone in a flash. And with flights as low as $100 right now, why wait?

San Juan Islands Flight Information
Destination airport
Seattle - Tacoma Intl.
Destination airport IATA code
SEA
Roundtrip price
$158

Last Minute Hotel Deals in San Juan Islands

Friday Harbor Suites
Friday Harbor Suites
2.5 out of 5
680 Spring Street, Friday Harbor, WA
The price is $187 per night from May 11 to May 12
$187
includes taxes & fees
May 11 - May 12
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.2/10 Very Good! (965 reviews)
"We had a fiasco of a trip getting there and Christina was so kind, understanding and helpful. Made me felt reassured that we would have a place to stay even when our trip got us on the island way later than planned! A huge THANK YOU to Christina!"

Reviewed on Apr 28, 2025

Friday Harbor Suites
The Orca Inn
The Orca Inn
2 out of 5
770 Mullis St., Friday Harbor, WA
The price is $111 per night from May 5 to May 6
$111
includes taxes & fees
May 5 - May 6
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (957 reviews)
"Small but perfect if all you need is a place to sleep near the main area!"

Reviewed on May 3, 2025

The Orca Inn
Inn to the Woods B&B
Inn to the Woods B&B
3.5 out of 5
46 Elena Drive, Friday Harbor, WA
Stay at this 3.5-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Reuben Tarte Memorial Park and Mt. Grant Preserve ...
9.6/10 Exceptional! (79 reviews)
"If we could give more than 5 stars we would! The owners were a delight of hospitality, warmth and welcoming. The breakfasts were ideal and thoughtful touches of complimentary gift bottle upon arrival was wonderful. We would always stay at this Inn if the opportunity presented itself once more."

Reviewed on Apr 25, 2025

Get rates
Inn to the Woods B&B
Earthbox Inn & Spa
Earthbox Inn & Spa
2.5 out of 5
410 Spring Street, Friday Harbor, WA
The price is $238 per night from May 5 to May 6
$238
includes taxes & fees
May 5 - May 6
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (887 reviews)
"Super convenient location, very close to shopping and restaurants. Easily within walking distance of the ferry terminal. Room was clean and well appointed, and has a unique lock code that changes per stay, so we felt very safe in the space."

Reviewed on Apr 28, 2025

Earthbox Inn & Spa
Rosario Village
Rosario Village
2 out of 5
1400 Rosario Rd, Eastsound, WA
The price is $177 per night from May 5 to May 6
$177
includes taxes & fees
May 5 - May 6
Stay at this hotel in Eastsound. Enjoy free WiFi, free parking, and a private beach. Popular attractions Rosario Mansion Museum and Cascade Lake are located ...
7.2/10 Good! (39 reviews)
"😊"

Reviewed on Apr 25, 2025

Rosario Village
Outlook Inn
Outlook Inn
3 out of 5
171 Main St, Eastsound, WA
The price is $458 per night from May 5 to May 6
$458
includes taxes & fees
May 5 - May 6
Stay at this 3-star hotel in Eastsound. Enjoy free WiFi, 2 meeting rooms, and daily housekeeping. Our guests praise the helpful staff in our reviews. Popular ...
9/10 Wonderful! (464 reviews)
"Our stay was fantastic! The suite was beautiful and clean. Service was top notch. We will definitely be back and recommend staying here"

Reviewed on Apr 27, 2025

Outlook Inn
Snug Harbor Resort
Snug Harbor Resort
2.5 out of 5
1997 Mitchell Bay Rd, Friday Harbor, WA
The price is $387 per night from May 5 to May 6
$387
includes taxes & fees
May 5 - May 6
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff in our reviews. Popular attractions English ...
9.8/10 Exceptional! (378 reviews)
"Remarkable scenic views. Quiet and relaxing！ It is good if the bed is king size."

Reviewed on May 1, 2025

Snug Harbor Resort
Roche Harbor Resort
Roche Harbor Resort
3 out of 5
248 Reuben Memorial Dr, Friday Harbor, WA
Stay at this 3-star spa resort in Friday Harbor. Enjoy an outdoor pool, a full-service spa, and 3 restaurants. Popular attractions Roche Harbor Marina and San ...
9/10 Wonderful! (382 reviews)
"No mini fridge or tv in room but not important everything was wonderful. Beautiful grounds friendly people"

Reviewed on May 2, 2025

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Roche Harbor Resort
See all 558 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Hotels With Free Airport Shuttle

Earthbox Inn & Spa
Earthbox Inn & Spa
2.5 out of 5
410 Spring Street, Friday Harbor, WA
The price is $238 per night from May 5 to May 6
$238
includes taxes & fees
May 5 - May 6
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (887 reviews)
"Super convenient location, very close to shopping and restaurants. Easily within walking distance of the ferry terminal. Room was clean and well appointed, and has a unique lock code that changes per stay, so we felt very safe in the space."

Reviewed on Apr 28, 2025

Earthbox Inn & Spa
See all 558 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.