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San Juan Islands

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San Juan Islands Flights as Low as $151

Prices found within past 7 days. Prices and availability subject to change. Additional terms may apply.

Bargain Flight
Mon, Dec 14 - Mon, Dec 14
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$151 Roundtrip, found 1 day ago
$151
Roundtrip
found 1 day ago
Select Bargain Flight flight, departing Mon, Dec 14 from San Francisco Intl. to Seattle - Tacoma Intl., returning Mon, Dec 14, priced at $151 found 1 day ago
Delta
Mon, Dec 14 - Mon, Dec 14
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$152 Roundtrip, found 1 day ago
$152
Roundtrip
found 1 day ago
Select Delta flight, departing Mon, Dec 14 from San Francisco Intl. to Seattle - Tacoma Intl., returning Mon, Dec 14, priced at $152 found 1 day ago
Frontier Airlines
Sat, Nov 7 - Tue, Nov 17
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$153 Roundtrip, found 2 days ago
$153
Roundtrip
found 2 days ago
Select Frontier Airlines flight, departing Sat, Nov 7 from San Francisco Intl. to Seattle - Tacoma Intl., returning Tue, Nov 17, priced at $153 found 2 days ago
United
Mon, Dec 14 - Mon, Dec 14
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$157 Roundtrip, found 1 day ago
$157
Roundtrip
found 1 day ago
Select United flight, departing Mon, Dec 14 from San Francisco Intl. to Seattle - Tacoma Intl., returning Mon, Dec 14, priced at $157 found 1 day ago
Delta
Thu, Nov 19 - Wed, Dec 2
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$159 Roundtrip, found 15 hours ago
$159
Roundtrip
found 15 hours ago
Select Delta flight, departing Thu, Nov 19 from San Francisco Intl. to Seattle - Tacoma Intl., returning Wed, Dec 2, priced at $159 found 15 hours ago
Frontier Airlines
Sat, Nov 21 - Thu, Nov 26
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$171 Roundtrip, found 15 hours ago
$171
Roundtrip
found 15 hours ago
Select Frontier Airlines flight, departing Sat, Nov 21 from San Francisco Intl. to Seattle - Tacoma Intl., returning Thu, Nov 26, priced at $171 found 15 hours ago
Frontier Airlines
Mon, Dec 14 - Mon, Dec 14
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$175 Roundtrip, found 1 day ago
$175
Roundtrip
found 1 day ago
Select Frontier Airlines flight, departing Mon, Dec 14 from San Francisco Intl. to Seattle - Tacoma Intl., returning Mon, Dec 14, priced at $175 found 1 day ago
Alaska Airlines
Mon, Dec 14 - Mon, Dec 14
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$177 Roundtrip, found 1 day ago
$177
Roundtrip
found 1 day ago
Select Alaska Airlines flight, departing Mon, Dec 14 from San Francisco Intl. to Seattle - Tacoma Intl., returning Mon, Dec 14, priced at $177 found 1 day ago
Alaska Airlines
Sat, Oct 31 - Sat, Oct 31
SFO
San Francisco Intl.
PAE
Seattle Paine Field Intl. Airport
$179 Roundtrip, found 3 days ago
$179
Roundtrip
found 3 days ago
Select Alaska Airlines flight, departing Sat, Oct 31 from San Francisco Intl. to Seattle Paine Field Intl. Airport, returning Sat, Oct 31, priced at $179 found 3 days ago
Alaska Airlines
Mon, Nov 2 - Wed, Nov 18
SFO
San Francisco Intl.
PAE
Seattle Paine Field Intl. Airport
$182 Roundtrip, found 15 hours ago
$182
Roundtrip
found 15 hours ago
Select Alaska Airlines flight, departing Mon, Nov 2 from San Francisco Intl. to Seattle Paine Field Intl. Airport, returning Wed, Nov 18, priced at $182 found 15 hours ago
Southwest Airlines
Thu, Oct 22 - Fri, Oct 30
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$205 Roundtrip, found 1 day ago
$205
Roundtrip
found 1 day ago
Select Southwest Airlines flight, departing Thu, Oct 22 from San Francisco Intl. to Seattle - Tacoma Intl., returning Fri, Oct 30, priced at $205 found 1 day ago
Alaska Airlines
Tue, Nov 3 - Sat, Nov 14
SFO
San Francisco Intl.
BLI
Bellingham Intl.
$263 Roundtrip, found 11 hours ago
$263
Roundtrip
found 11 hours ago
Select Alaska Airlines flight, departing Tue, Nov 3 from San Francisco Intl. to Bellingham Intl., returning Sat, Nov 14, priced at $263 found 11 hours ago
Bargain Flight
Thu, Oct 22 - Tue, Oct 27
DTW
Detroit Metropolitan Wayne County
SEA
Seattle - Tacoma Intl.
$287 Roundtrip, found 1 day ago
$287
Roundtrip
found 1 day ago
Select Bargain Flight flight, departing Thu, Oct 22 from Detroit Metropolitan Wayne County to Seattle - Tacoma Intl., returning Tue, Oct 27, priced at $287 found 1 day ago
American Airlines
Mon, Nov 2 - Wed, Nov 18
SFO
San Francisco Intl.
PAE
Seattle Paine Field Intl. Airport
$307 Roundtrip, found 15 hours ago
$307
Roundtrip
found 15 hours ago
Select American Airlines flight, departing Mon, Nov 2 from San Francisco Intl. to Seattle Paine Field Intl. Airport, returning Wed, Nov 18, priced at $307 found 15 hours ago
Alaska Airlines
Fri, Dec 11 - Wed, Dec 16
DTW
Detroit Metropolitan Wayne County
PAE
Seattle Paine Field Intl. Airport
$611 Roundtrip, found 3 days ago
$611
Roundtrip
found 3 days ago
Select Alaska Airlines flight, departing Fri, Dec 11 from Detroit Metropolitan Wayne County to Seattle Paine Field Intl. Airport, returning Wed, Dec 16, priced at $611 found 3 days ago
JetBlue Airways
Wed, Oct 14 - Sun, Oct 18
DTW
Detroit Metropolitan Wayne County
SEA
Seattle - Tacoma Intl.
$924 Roundtrip, found 5 days ago
$924
Roundtrip
found 5 days ago
Select JetBlue Airways flight, departing Wed, Oct 14 from Detroit Metropolitan Wayne County to Seattle - Tacoma Intl., returning Sun, Oct 18, priced at $924 found 5 days ago

Cheap Flights to San Juan Islands

Fall in love at first flight with your vacation to San Juan Islands by saving a ton of cash on your last-minute cheap flight. There’s no more scouring the internet for a good deal—book your flight to San Juan Islands on Hotwire, and you’ll be up, up, and on a getaway in no time.

Because once the wheels are down in San Juan Islands, the good times start rolling. So buckle up, you’re in for a fun ride.

Frequently Asked Questions About flights to San Juan Islands

Don’t waste your time on endless searches for cheap airline tickets oneway or roundtrip. We’ll have you on your way to San Juan Islands with a tiny bag of pretzels in your hand before you can say “tray tables in the upright position”—and for a ticket price that works for your vacay budget.

So all you have to worry about is where you’re headed after the SEA airport.

What is the cheapest month to fly to San Juan Islands?

Airline ticket prices fluctuate all the time, depending on the day of the week or the month of the year. The cheapest round trip flights to San Juan Islands are in December, but when you book your flight on Hotwire, savings are always in season.

How many airlines fly to San Juan Islands?

Variety is the spice of life, even when it comes to booking your next trip. Want options for airlines? You’ll find 14 to choose from for your flight to San Juan Islands.

What airport is best to fly into San Juan Islands?

When you’re planning your trip to San Juan Islands, convenience is the name of the game. Luckily, San Juan Islands Deer Harbor Seaplane Base Airport is nearby so you can deplane and get going on checking off everything on your San Juan Islands must-do list.

How much are flights to San Juan Islands?

Got very cheap flights on your vacation itinerary? When you book your airline tickets to San Juan Islands on Hotwire, you may just get what’s on your getaway wish list. With tickets as low as $151, you’ll have leftover cash for at least a magazine and a bottle of water at the airport book store.

How to get cheap flights to San Juan Islands?

The trick to saving a stack of cash on your flight to San Juan Islands? Snatch up that Hotwire flight deal when you see a killer rate because it could be gone in a flash. And with flights as low as $151 right now, why wait?

San Juan Islands Flight Information
Destination airport
Seattle Paine Field Intl. Airport
Destination airport IATA code
PAE
Roundtrip price
$217

Last Minute Hotel Deals in San Juan Islands

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and housekeeping. Popular attractions San Juan Islands Museum of Art and San Juan Historical ...
8.4/10 Very Good! (170 reviews)
"Stay was very nice. Easy to find and get too. Quite a and peaceful."

Reviewed on Oct 2, 2026

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The Orca Inn
Rosario Resort

Rosario Resort

2 out of 5
1624 Rosario Rd Eastsound WA
Book a stay at this beach hotel in Eastsound. Enjoy free WiFi, free parking, and an outdoor pool. Popular attractions Rosario Mansion Museum and Cascade Lake ...
7.6/10 Good! (187 reviews)
"I really wish I could give this place a great rating, but they’re banking on the fact that they have a great view. The rooms were highly outdated; old carpet, old paint, old showers, mold on the wall, old thermostats. For the amount of money that you pay for the room, it’s not worth it. The thermostats ..."

Reviewed on Oct 2, 2026

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Rosario Resort
Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (1,006 reviews)
"The staff was great"

Reviewed on Oct 1, 2026

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Friday Harbor Suites
Inn to the Woods B&B

Inn to the Woods B&B

3.5 out of 5
46 Elena Drive Friday Harbor WA
Stay at this B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Reuben Tarte Memorial Park and Mt. Grant Preserve are ...
9.8/10 Exceptional! (110 reviews)
"The home was charming and James was an excellent host! We enjoyed the atmosphere and their wonderful pets that would greet us. The breakfast that was served to us each morning was terrific! Would definitely stay again!"

Reviewed on Oct 2, 2026

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Inn to the Woods B&B
Lopez Islander Resort

Lopez Islander Resort

3.5 out of 5
2864 Fisherman Bay Rd Lopez Island WA
Stay at this hotel in Lopez Island. Enjoy free WiFi, free parking, and an outdoor pool. Our guests praise the helpful staff in our reviews. Popular attractions ...
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Lopez Islander Resort
Snug Harbor Resort

Snug Harbor Resort

2.5 out of 5
1997 Mitchell Bay Rd Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff in our reviews. Popular attractions English ...
9.8/10 Exceptional! (542 reviews)
"This is a beautiful property, which makes it disappointing that the service left such a different impression. We arrived at 3:30 p.m., tired from a long day, and asked if we could check in before the posted 4:00 time. Nila at the front desk said the rooms had not been released by the cleaning crew. ..."

Reviewed on Sep 25, 2026

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Snug Harbor Resort
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.8/10 Excellent! (1,003 reviews)
"I gave this lodging a low rating because it was not worth the price. It is clearly an old motel that has had some minimal upgrade for considerable price. They replaced old carpeting for wood floors and added a white comforter and duvet that looks clean and lovely. But the place looks like, feels ..."

Reviewed on Oct 2, 2026

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Earthbox Inn & Spa
Discovery Inn

Discovery Inn

2 out of 5
1016 Guard St. Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and slippers. Popular attractions San Juan Historical Society and Museum and San Juan Islands ...
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Discovery Inn
See all 575 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Hotels With Free Airport Shuttle

Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.8/10 Excellent! (1,003 reviews)
"I gave this lodging a low rating because it was not worth the price. It is clearly an old motel that has had some minimal upgrade for considerable price. They replaced old carpeting for wood floors and added a white comforter and duvet that looks clean and lovely. But the place looks like, feels ..."

Reviewed on Oct 2, 2026

Get rates
Earthbox Inn & Spa
See all 575 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.