Search for Cheap Deals on
Hotels in San Juan Islands

Check Last Minute San Juan Islands Hotel Deals

Tonight May 3 - May 4Next weekend May 9 - May 11

Choose from 558 San Juan Islands Hotel Deals

Friday Harbor Suites
Friday Harbor Suites
2.5 out of 5
680 Spring Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $187 per night from May 11 to May 12
$187
includes taxes & fees
May 11 - May 12
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.2/10 Very Good! (965 reviews)
"We had a fiasco of a trip getting there and Christina was so kind, understanding and helpful. Made me felt reassured that we would have a place to stay even when our trip got us on the island way later than planned! A huge THANK YOU to Christina!"

Reviewed on Apr 28, 2025

Friday Harbor Suites
The Orca Inn
The Orca Inn
2 out of 5
770 Mullis St., Friday Harbor, WA
  • 14 min drive from Roche Harbor Marina
The price is $111 per night from May 4 to May 5
$111
includes taxes & fees
May 4 - May 5
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (955 reviews)
One night on Friday Harbor
"The accommodations were adequate for my one night business stay. I would stay here again. Taking in sunset from Line Kiln State Park was the highlight."

Reviewed on Apr 23, 2025

The Orca Inn
Inn to the Woods B&B
Inn to the Woods B&B
3.5 out of 5
46 Elena Drive, Friday Harbor, WA
  • 6 min drive from Roche Harbor Marina
Stay at this 3.5-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Reuben Tarte Memorial Park and Mt. Grant Preserve ...
9.6/10 Exceptional! (79 reviews)
"If we could give more than 5 stars we would! The owners were a delight of hospitality, warmth and welcoming. The breakfasts were ideal and thoughtful touches of complimentary gift bottle upon arrival was wonderful. We would always stay at this Inn if the opportunity presented itself once more."

Reviewed on Apr 25, 2025

Inn to the Woods B&B
Earthbox Inn & Spa
Earthbox Inn & Spa
2.5 out of 5
410 Spring Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $238 per night from May 4 to May 5
$238
includes taxes & fees
May 4 - May 5
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (887 reviews)
"Super convenient location, very close to shopping and restaurants. Easily within walking distance of the ferry terminal. Room was clean and well appointed, and has a unique lock code that changes per stay, so we felt very safe in the space."

Reviewed on Apr 28, 2025

Earthbox Inn & Spa
Rosario Village
Rosario Village
2 out of 5
1400 Rosario Rd, Eastsound, WA
  • 7 min drive from Roche Harbor Marina
The price is $177 per night from May 4 to May 5
$177
includes taxes & fees
May 4 - May 5
Stay at this hotel in Eastsound. Enjoy free WiFi, free parking, and a private beach. Popular attractions Rosario Mansion Museum and Cascade Lake are located ...
7.2/10 Good! (39 reviews)
"😊"

Reviewed on Apr 25, 2025

Rosario Village
Snug Harbor Resort
Snug Harbor Resort
2.5 out of 5
1997 Mitchell Bay Rd, Friday Harbor, WA
  • 7 min drive from Roche Harbor Marina
The price is $387 per night from May 5 to May 6
$387
includes taxes & fees
May 5 - May 6
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff in our reviews. Popular attractions English ...
9.8/10 Exceptional! (378 reviews)
"Remarkable scenic views. Quiet and relaxing! It is good if the bed is king size."

Reviewed on May 1, 2025

Snug Harbor Resort
Outlook Inn
Outlook Inn
3 out of 5
171 Main St, Eastsound, WA
  • 14 min drive from Roche Harbor Marina
The price is $458 per night from May 4 to May 5
$458
includes taxes & fees
May 4 - May 5
Stay at this 3-star hotel in Eastsound. Enjoy free WiFi, 2 meeting rooms, and daily housekeeping. Our guests praise the helpful staff in our reviews. Popular ...
9/10 Wonderful! (464 reviews)
"Our stay was fantastic! The suite was beautiful and clean. Service was top notch. We will definitely be back and recommend staying here"

Reviewed on Apr 27, 2025

Outlook Inn
Roche Harbor Resort
Roche Harbor Resort
3 out of 5
248 Reuben Memorial Dr, Friday Harbor, WA
  • 1 min walk from Roche Harbor Marina
Stay at this 3-star spa resort in Friday Harbor. Enjoy an outdoor pool, a full-service spa, and 3 restaurants. Popular attractions Roche Harbor Marina and San ...
9/10 Wonderful! (382 reviews)
"No mini fridge or tv in room but not important everything was wonderful. Beautiful grounds friendly people"

Reviewed on May 2, 2025

Roche Harbor Resort
Lopez Islander Resort
Lopez Islander Resort
3.5 out of 5
2864 Fisherman Bay Rd, Lopez Island, WA
  • 17 min drive from Roche Harbor Marina
The price is $198 per night from May 4 to May 5
$198
includes taxes & fees
May 4 - May 5
Stay at this 3.5-star hotel in Lopez Island. Enjoy free WiFi, free parking, and an outdoor pool. Our guests praise the helpful staff in our reviews. Popular ...
8.4/10 Very Good! (323 reviews)
"It was a lovely property with amazing views from the room. The staff are friendly and the hot tub was excellent after the Tour de Lopez bike ride."

Reviewed on Apr 28, 2025

Lopez Islander Resort
Friday Harbor House
Friday Harbor House
3.5 out of 5
130 West Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $420 per night from May 7 to May 8
$420
includes taxes & fees
May 7 - May 8
Stay at this 3.5-star business-friendly hotel in Friday Harbor. Enjoy free WiFi, free parking, and breakfast (surcharge). Our guests praise the helpful staff ...
9.4/10 Exceptional! (218 reviews)
The best part of the trip
"This hotel never disappoints us. We stay here whenever we visit the island. The staff is amazing and very welcoming."

Reviewed on May 2, 2025

Friday Harbor House
Landmark Inn on Orcas Island
Landmark Inn on Orcas Island
3 out of 5
67 Main St, Eastsound, WA
  • 14 min drive from Roche Harbor Marina
The price is $264 per night from May 4 to May 5
$264
includes taxes & fees
May 4 - May 5
Stay at this 3-star hotel in Eastsound. Enjoy free WiFi, free parking, and a garden. Our guests praise the helpful staff in our reviews. Popular attractions ...
9.2/10 Wonderful! (161 reviews)
"It is not fancy but it is clean, nice kitchen setup, very spacious rooms (1 bedroom), great staff, 2 minutes to town. Beautiful views. I would definitely say here again!"

Reviewed on Apr 27, 2025

Landmark Inn on Orcas Island
Tucker House Inn
Tucker House Inn
4 out of 5
275 C Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $207 per night from May 22 to May 23
$207
includes taxes & fees
May 22 - May 23
Stay at this 4-star beach B&B in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff in our reviews. Popular ...
9.2/10 Wonderful! (253 reviews)
"It was a great cottage with lovely views, conveniently close to everything and with some excellent amenities. 11/10 would book again."

Reviewed on Apr 27, 2025

Tucker House Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Find cheap hotels in San Juan Islands

You’re not an average traveler—and Hotwire knows it. Your wanderlust takes you off the beaten path to discover unique adventures and every travel destination’s lesser-known tourist scenes. Hotwire has the hookup! Book your San Juan Islands hotel with Hotwire to complete your one-of-a-kind travel checklist.

For you, intrepid voyager, Hotwire has a large selection of the best hotels in San Juan Islands.

Choosing the right hotel in Washington has everything to do with the way you want your trip to go. If you’ve scribbled a few obscure destinations on your itinerary, you probably already have a good sense of how your getaway is taking shape. Lean into that by booking one of San Juan Islands’s 558 hotels. Choose the one that best catches your trip’s tourist drift.

If you’re traveling during the week for business, Hotwire can score you a luxury hotel for as low as $111. In town for pleasure? Hotwire still has you covered. If you’re in the mood for a quick last-minute weekend getaway or spa retreat, you can get great San Juan Islands hotel deals at the last minute.

While traveling, where you stay plays a major role in your overall vacation enjoyment. Choosing the right hotel is just as important as making sure you book the right flight and car rental. If you’re traveling with family or friends, you may need to book a hotel with connecting rooms. If you enjoy an elegant and relaxing hotel ambiance, opt for one of Hotwire’s luxury hotels in San Juan Islands. No matter your reason for visiting San Juan Islands, with Hotwire’s large selection of hotels in the area, you’re sure to book a hotel that meets all your accommodation needs.

Frequently Asked Questions About San Juan Islands hotels

Where can I find the best last-minute travel deals?

If you’re traveling in the spirit of spontaneity, you’ll love the idea of leaving your exact hotel choice up to chance. With Hotwire Hot Rates, you can unlock great deals on your next flight, hotel, or car rental. Just plug in your general preferences and let Hotwire choose last-minute hotel deals in San Juan Islands for as low as $111.

How many hotels are there in San Juan Islands?

With over 558 hotels in San Juan Islands, you’re sure to find one that best matches your travel mood. When you book with Hotwire, you can score a stellar home away from home for as low as $111.

How to find cheap car rentals in San Juan Islands?

Finding a cheap car rental deal in San Juan Islands is as easy as scoring cheap hotels in San Juan Islands. Hotwire partners with top-of-the-line car rental companies to bring you a large selection of affordable options. Whether you’re in need of a large SUV for the entire family or a more compact but stylish vehicle, Hotwire has you covered. You can unlock great car rental deals if you book a Hotwire Hot Rate at the last minute.