Search for Cheap Deals on
Hotels in San Juan Islands

Check Last Minute San Juan Islands Hotel Deals

Tonight Jul 18 - Jul 19This weekend Jul 18 - Jul 20

Choose from 592 San Juan Islands Hotel Deals

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
  • 14 min drive from Roche Harbor Marina
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (999 reviews)
Nice, very small
"Clean and very friendly staff. Standard room booked for 2 people was extraordinarily small."

Reviewed on Jul 15, 2025

Get rates
The Orca Inn
Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.4/10 Very Good! (1,002 reviews)
"Good location"

Reviewed on Jul 13, 2025

Get rates
Friday Harbor Suites
Inn to the Woods B&B

Inn to the Woods B&B

3.5 out of 5
46 Elena Drive, Friday Harbor, WA
  • 6 min drive from Roche Harbor Marina
Stay at this 3.5-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Reuben Tarte Memorial Park and Mt. Grant Preserve ...
9.6/10 Exceptional! (82 reviews)
"Wonderful breakfasts. Appreciate the excellent work to cover food allergies. Lovely host and hostess."

Reviewed on Jul 6, 2025

Get rates
Inn to the Woods B&B
Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (930 reviews)
"Nice place"

Reviewed on Jul 16, 2025

Get rates
Earthbox Inn & Spa
Outlook Inn

Outlook Inn

3 out of 5
171 Main St, Eastsound, WA
  • 14 min drive from Roche Harbor Marina
Stay at this 3-star hotel in Eastsound. Enjoy free WiFi, 2 meeting rooms, and daily housekeeping. Our guests praise the helpful staff in our reviews. Popular ...
9/10 Wonderful! (480 reviews)
"Great bed"

Reviewed on Jul 14, 2025

Get rates
Outlook Inn
Lopez Islander Resort

Lopez Islander Resort

3.5 out of 5
2864 Fisherman Bay Rd, Lopez Island, WA
  • 17 min drive from Roche Harbor Marina
Stay at this 3.5-star hotel in Lopez Island. Enjoy free WiFi, free parking, and an outdoor pool. Our guests praise the helpful staff in our reviews. Popular ...
8.4/10 Very Good! (339 reviews)
"Great location"

Reviewed on Jul 15, 2025

Get rates
Lopez Islander Resort
Rosario Village

Rosario Village

2 out of 5
1400 Rosario Rd, Eastsound, WA
  • 7 min drive from Roche Harbor Marina
Stay at this hotel in Eastsound. Enjoy free WiFi, free parking, and a private beach. Popular attractions Rosario Mansion Museum and Cascade Lake are located ...
7.2/10 Good! (60 reviews)
"Enjoyed our peaceful stay at Rosario Village. The room was clean. Great water pressure for the shower."

Reviewed on Jun 14, 2025

Get rates
Rosario Village
Deer Harbor Inn

Deer Harbor Inn

3 out of 5
33 Inn Lane, Deer Harbor, WA
  • 28 min walk from Roche Harbor Marina
Stay at this 3-star hotel in Deer Harbor. Enjoy free WiFi, free parking, and a garden. Popular attractions Skull Island State Park and West Sound Marina are ...
8.2/10 Very Good! (177 reviews)
"Very clean spacious room, well appointed. Comfy bed. Great selection of tea and coffee. A nice bonus was the nightly bbq on the grounds so you didn’t have to drive to a restaurant unless you wanted something different."

Reviewed on Jul 13, 2025

Get rates
Deer Harbor Inn
Bird Rock Hotel

Bird Rock Hotel

2 out of 5
35 First Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Our guests praise the bathrooms in our reviews. Popular attractions Whale ...
8.6/10 Excellent! (345 reviews)
"Nice place! Friendly staff!"

Reviewed on Jun 22, 2025

Get rates
Bird Rock Hotel
Landmark Inn on Orcas Island

Landmark Inn on Orcas Island

3 out of 5
67 Main St, Eastsound, WA
  • 14 min drive from Roche Harbor Marina
Stay at this 3-star hotel in Eastsound. Enjoy free WiFi, free parking, and a garden. Our guests praise the helpful staff in our reviews. Popular attractions ...
9.2/10 Wonderful! (168 reviews)
"Great location right near East sound, beautiful views, great accomodations with kitchen. Staff is best I've ever seen, very friendly and helpful."

Reviewed on Jun 14, 2025

Get rates
Landmark Inn on Orcas Island
Lopez Farm Cottages & Tent Camping

Lopez Farm Cottages & Tent Camping

2 out of 5
607 Fisherman Bay Rd, Lopez Island, WA
  • 12 min drive from Roche Harbor Marina
Stay at this hotel in Lopez Island. Enjoy free WiFi, free parking, and premium bedding. Popular attractions Port Stanley Schoolhouse and Odlin County Park are ...
10/10 Exceptional! (22 reviews)
"We enjoyed the quiet surroundings and comfortable accommodations. Mari and Jordy were gracious and helpful hosts."

Reviewed on Jul 14, 2025

Get rates
Lopez Farm Cottages & Tent Camping
Snug Harbor Resort

Snug Harbor Resort

2.5 out of 5
1997 Mitchell Bay Rd, Friday Harbor, WA
  • 7 min drive from Roche Harbor Marina
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff in our reviews. Popular attractions English ...
9.8/10 Exceptional! (396 reviews)
"The property is amazing. Amenities, location, staff, comfort and access to water activities. The place is serene and with a great vibe. We loved our stay and will be back. Thank you so much for a memorable experience. The Beards"

Reviewed on Jul 14, 2025

Get rates
Snug Harbor Resort
See all 592 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Find cheap hotels in San Juan Islands

You’re not an average traveler—and Hotwire knows it. Your wanderlust takes you off the beaten path to discover unique adventures and every travel destination’s lesser-known tourist scenes. Hotwire has the hookup! Book your San Juan Islands hotel with Hotwire to complete your one-of-a-kind travel checklist.

For you, intrepid voyager, Hotwire has a large selection of the best hotels in San Juan Islands.

Choosing the right hotel in Washington has everything to do with the way you want your trip to go. If you’ve scribbled a few obscure destinations on your itinerary, you probably already have a good sense of how your getaway is taking shape. Lean into that by booking one of San Juan Islands’s 592 hotels. Choose the one that best catches your trip’s tourist drift.

If you’re traveling during the week for business, Hotwire can score you a luxury hotel for as low as $175. In town for pleasure? Hotwire still has you covered. If you’re in the mood for a quick last-minute weekend getaway or spa retreat, you can get great San Juan Islands hotel deals at the last minute.

While traveling, where you stay plays a major role in your overall vacation enjoyment. Choosing the right hotel is just as important as making sure you book the right flight and car rental. If you’re traveling with family or friends, you may need to book a hotel with connecting rooms. If you enjoy an elegant and relaxing hotel ambiance, opt for one of Hotwire’s luxury hotels in San Juan Islands. No matter your reason for visiting San Juan Islands, with Hotwire’s large selection of hotels in the area, you’re sure to book a hotel that meets all your accommodation needs.

Frequently Asked Questions About San Juan Islands hotels

Where can I find the best last-minute travel deals?

If you’re traveling in the spirit of spontaneity, you’ll love the idea of leaving your exact hotel choice up to chance. With Hotwire Hot Rates, you can unlock great deals on your next flight, hotel, or car rental. Just plug in your general preferences and let Hotwire choose last-minute hotel deals in San Juan Islands for as low as $175.

How many hotels are there in San Juan Islands?

With over 592 hotels in San Juan Islands, you’re sure to find one that best matches your travel mood. When you book with Hotwire, you can score a stellar home away from home for as low as $175.

How to find cheap car rentals in San Juan Islands?

Finding a cheap car rental deal in San Juan Islands is as easy as scoring cheap hotels in San Juan Islands. Hotwire partners with top-of-the-line car rental companies to bring you a large selection of affordable options. Whether you’re in need of a large SUV for the entire family or a more compact but stylish vehicle, Hotwire has you covered. You can unlock great car rental deals if you book a Hotwire Hot Rate at the last minute.