Search for Cheap Deals on
Hotels in San Juan Islands

Check Last Minute San Juan Islands Hotel Deals

Tonight Apr 13 - Apr 14Next weekend Apr 18 - Apr 20

Choose from 549 San Juan Islands Hotel Deals

Friday Harbor Suites
Friday Harbor Suites
2.5 out of 5
680 Spring Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $220 per night from May 11 to May 12
$220
includes taxes & fees
May 11 - May 12
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.2/10 Very Good! (959 reviews)
"Quiet and comfortable stay, and waking distance to Friday Harbor museums, shops and dining."

Reviewed on Apr 9, 2025

Friday Harbor Suites
The Orca Inn
The Orca Inn
2 out of 5
770 Mullis St., Friday Harbor, WA
  • 14 min drive from Roche Harbor Marina
The price is $111 per night from Apr 14 to Apr 15
$111
includes taxes & fees
Apr 14 - Apr 15
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (951 reviews)
"Easy check in"

Reviewed on Apr 1, 2025

The Orca Inn
Inn to the Woods B&B
Inn to the Woods B&B
3.5 out of 5
46 Elena Drive, Friday Harbor, WA
  • 6 min drive from Roche Harbor Marina
Stay at this 3.5-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Reuben Tarte Memorial Park and Mt. Grant Preserve ...
9.6/10 Exceptional! (78 reviews)
"Very comfortable and cozy. Great host. Good communication and very welcoming. Access is a bit difficult if you have mobility issues but they were very accommodating to allow us to use a different access"

Reviewed on Nov 11, 2024

Inn to the Woods B&B
Snug Harbor Resort
Snug Harbor Resort
2.5 out of 5
1997 Mitchell Bay Rd, Friday Harbor, WA
  • 7 min drive from Roche Harbor Marina
The price is $249 per night from Apr 29 to Apr 30
$249
includes taxes & fees
Apr 29 - Apr 30
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff in our reviews. Popular attractions English ...
9.8/10 Exceptional! (365 reviews)
"This property was absolutely clean and every need was thought out, from firewood to baking dishes in case you want to use the oven. The grounds were manicured and beautiful. This is a place to go to if you want to throw your day to day aside and get lost for a while. We thought it was great."

Reviewed on Apr 8, 2025

Snug Harbor Resort
Earthbox Inn & Spa
Earthbox Inn & Spa
2.5 out of 5
410 Spring Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $238 per night from Apr 14 to Apr 15
$238
includes taxes & fees
Apr 14 - Apr 15
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (884 reviews)
"Nice and clean; friendly staff."

Reviewed on Apr 10, 2025

Earthbox Inn & Spa
Roche Harbor Resort
Roche Harbor Resort
3 out of 5
248 Reuben Memorial Dr, Friday Harbor, WA
  • 1 min walk from Roche Harbor Marina
The price is $251 per night from Apr 14 to Apr 15
$251
includes taxes & fees
Apr 14 - Apr 15
Stay at this 3-star spa resort in Friday Harbor. Enjoy an outdoor pool, a full-service spa, and 3 restaurants. Popular attractions Roche Harbor Marina and San ...
9/10 Wonderful! (374 reviews)
"Bathroom was nice 😆😄"

Reviewed on Apr 5, 2025

Roche Harbor Resort
Lopez Islander Resort
Lopez Islander Resort
3.5 out of 5
2864 Fisherman Bay Rd, Lopez Island, WA
  • 17 min drive from Roche Harbor Marina
The price is $198 per night from Apr 14 to Apr 15
$198
includes taxes & fees
Apr 14 - Apr 15
Stay at this 3.5-star hotel in Lopez Island. Enjoy free WiFi, free parking, and an outdoor pool. Our guests praise the helpful staff in our reviews. Popular ...
8.4/10 Very Good! (322 reviews)
"It was quiet and well maintained!"

Reviewed on Mar 28, 2025

Lopez Islander Resort
Outlook Inn
Outlook Inn
3 out of 5
171 Main St, Eastsound, WA
  • 14 min drive from Roche Harbor Marina
The price is $391 per night from Apr 14 to Apr 15
$391
includes taxes & fees
Apr 14 - Apr 15
Stay at this 3-star hotel in Eastsound. Enjoy free WiFi, 2 meeting rooms, and daily housekeeping. Our guests praise the helpful staff in our reviews. Popular ...
9/10 Wonderful! (460 reviews)
"Excellent location. Beautiful room."

Reviewed on Mar 27, 2025

Outlook Inn
Rosario Village
Rosario Village
2 out of 5
1400 Rosario Rd, Eastsound, WA
  • 7 min drive from Roche Harbor Marina
The price is $186 per night from Apr 14 to Apr 15
$186
includes taxes & fees
Apr 14 - Apr 15
Stay at this hotel in Eastsound. Enjoy free WiFi, free parking, and a private beach. Popular attractions Rosario Mansion Museum and Cascade Lake are located ...
7.2/10 Good! (34 reviews)
Retreat overdue
"Had a bit of a tough time finding our building but was very pleasantly surprised by our room and location! Clean and super quiet. Remodeling is going on but didnt really car. I was also able to plug my car into a charger. They have 2 stations."

Reviewed on Mar 27, 2025

Rosario Village
Landmark Inn on Orcas Island
Landmark Inn on Orcas Island
3 out of 5
67 Main St, Eastsound, WA
  • 14 min drive from Roche Harbor Marina
The price is $220 per night from Apr 14 to Apr 15
$220
includes taxes & fees
Apr 14 - Apr 15
Stay at this 3-star hotel in Eastsound. Enjoy free WiFi, free parking, and a garden. Our guests praise the helpful staff in our reviews. Popular attractions ...
9.2/10 Wonderful! (156 reviews)
"Enjoyed our stay, this was our second visit. The location and spaciousness of the townhome is fantastic. Staff friendly and helpful. Stocked kitchen, nice decor and comfortable beds. The unit had areas of wear and tear that need to be repaired or replaced (a bathroom door, damaged flooring, painting ..."

Reviewed on Apr 11, 2025

Landmark Inn on Orcas Island
Friday Harbor House
Friday Harbor House
3.5 out of 5
130 West Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $308 per night from Apr 14 to Apr 15
$308
includes taxes & fees
Apr 14 - Apr 15
Stay at this 3.5-star business-friendly hotel in Friday Harbor. Enjoy free WiFi, free parking, and breakfast (surcharge). Our guests praise the helpful staff ...
9.4/10 Exceptional! (217 reviews)

Reviewed on Apr 2, 2025

Friday Harbor House
The Edenwild Boutique Inn
The Edenwild Boutique Inn
2.5 out of 5
132 Lopez Rd, Lopez Island, WA
  • 15 min drive from Roche Harbor Marina
The price is $136 per night from Apr 21 to Apr 22
$136
includes taxes & fees
Apr 21 - Apr 22
Stay at this hotel in Lopez Island. Enjoy free WiFi, free parking, and a garden. Popular attractions Lopez Island Bike Ride and Lopez Island Vineyards and Winery ...
9.4/10 Exceptional! (234 reviews)
"This is a gorgeous mansion of a house with beautiful antique furniture, comfortable beds, within walking distance of everything in Lopez Village. The owner is around but in the background so available if you need him. Super comfy room with all the amenities one looks for in a comfy BnB style ..."

Reviewed on Mar 24, 2025

The Edenwild Boutique Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Find cheap hotels in San Juan Islands

You’re not an average traveler—and Hotwire knows it. Your wanderlust takes you off the beaten path to discover unique adventures and every travel destination’s lesser-known tourist scenes. Hotwire has the hookup! Book your San Juan Islands hotel with Hotwire to complete your one-of-a-kind travel checklist.

For you, intrepid voyager, Hotwire has a large selection of the best hotels in San Juan Islands.

Choosing the right hotel in Washington has everything to do with the way you want your trip to go. If you’ve scribbled a few obscure destinations on your itinerary, you probably already have a good sense of how your getaway is taking shape. Lean into that by booking one of San Juan Islands’s 549 hotels. Choose the one that best catches your trip’s tourist drift.

If you’re traveling during the week for business, Hotwire can score you a luxury hotel for as low as $111. In town for pleasure? Hotwire still has you covered. If you’re in the mood for a quick last-minute weekend getaway or spa retreat, you can get great San Juan Islands hotel deals at the last minute.

While traveling, where you stay plays a major role in your overall vacation enjoyment. Choosing the right hotel is just as important as making sure you book the right flight and car rental. If you’re traveling with family or friends, you may need to book a hotel with connecting rooms. If you enjoy an elegant and relaxing hotel ambiance, opt for one of Hotwire’s luxury hotels in San Juan Islands. No matter your reason for visiting San Juan Islands, with Hotwire’s large selection of hotels in the area, you’re sure to book a hotel that meets all your accommodation needs.

Frequently Asked Questions About San Juan Islands hotels

Where can I find the best last-minute travel deals?

If you’re traveling in the spirit of spontaneity, you’ll love the idea of leaving your exact hotel choice up to chance. With Hotwire Hot Rates, you can unlock great deals on your next flight, hotel, or car rental. Just plug in your general preferences and let Hotwire choose last-minute hotel deals in San Juan Islands for as low as $111.

How many hotels are there in San Juan Islands?

With over 549 hotels in San Juan Islands, you’re sure to find one that best matches your travel mood. When you book with Hotwire, you can score a stellar home away from home for as low as $111.

How to find cheap car rentals in San Juan Islands?

Finding a cheap car rental deal in San Juan Islands is as easy as scoring cheap hotels in San Juan Islands. Hotwire partners with top-of-the-line car rental companies to bring you a large selection of affordable options. Whether you’re in need of a large SUV for the entire family or a more compact but stylish vehicle, Hotwire has you covered. You can unlock great car rental deals if you book a Hotwire Hot Rate at the last minute.