Search Cheap Flights to
San Juan Island

Search 400 airlines and 321,000 hotels worldwide.

Stop Planning & Start Exploring

FREE 24 hour cancellation on most flights

San Juan Island Flights as Low as $96

Prices found within past 7 days. Prices and availability subject to change. Additional terms may apply.

Hawaiian Airlines
Delta
Delta
Frontier Airlines
Frontier Airlines
Hawaiian Airlines
Hawaiian Airlines
Alaska Airlines
Frontier Airlines
United
Bargain Flight
American Airlines
Spirit Airlines
Alaska Airlines
Alaska Airlines
Alaska Airlines

Cheap Flights to San Juan Island

Fall in love at first flight with your vacation to San Juan Island by saving a ton of cash on your last-minute cheap flight. There’s no more scouring the internet for a good deal—book your flight to San Juan Island on Hotwire, and you’ll be up, up, and on a getaway in no time.

Because once the wheels are down in San Juan Island, the good times start rolling. So buckle up, you’re in for a fun ride.

Frequently Asked Questions About flights to San Juan Island

Don’t waste your time on endless searches for cheap airline tickets oneway or roundtrip. We’ll have you on your way to San Juan Island with a tiny bag of pretzels in your hand before you can say “tray tables in the upright position”—and for a ticket price that works for your vacay budget.

So all you have to worry about is where you’re headed after the SEA airport.

What is the cheapest month to fly to San Juan Island?

Airline ticket prices fluctuate all the time, depending on the day of the week or the month of the year. The cheapest round trip flights to San Juan Island are in August, but when you book your flight on Hotwire, savings are always in season.

How many airlines fly to San Juan Island?

Variety is the spice of life, even when it comes to booking your next trip. Want options for airlines? You’ll find 15 to choose from for your flight to San Juan Island.

What airport is best to fly into San Juan Island?

When you’re planning your trip to San Juan Island, convenience is the name of the game. Luckily, San Juan Island Friday Harbor Airport is nearby so you can deplane and get going on checking off everything on your San Juan Island must-do list.

How much are flights to San Juan Island?

Got very cheap flights on your vacation itinerary? When you book your airline tickets to San Juan Island on Hotwire, you may just get what’s on your getaway wish list. With tickets as low as $96, you’ll have leftover cash for at least a magazine and a bottle of water at the airport book store.

How to get cheap flights to San Juan Island?

The trick to saving a stack of cash on your flight to San Juan Island? Snatch up that Hotwire flight deal when you see a killer rate because it could be gone in a flash. And with flights as low as $96 right now, why wait?

San Juan Island Flight Information
Destination airport
Seattle - Tacoma Intl.
Destination airport IATA code
SEA
Roundtrip price
$96

Last Minute Hotel Deals in San Juan Island

Inn to the Woods B&B
Inn to the Woods B&B
3.5 out of 5
46 Elena Drive, Friday Harbor, WA
Stay at this 3.5-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Reuben Tarte Memorial Park and Mt. Grant Preserve ...
9.6/10 Exceptional! (82 reviews)
"Wonderful breakfasts. Appreciate the excellent work to cover food allergies. Lovely host and hostess."

Reviewed on Jul 6, 2025

Inn to the Woods B&B
The Orca Inn
The Orca Inn
2 out of 5
770 Mullis St., Friday Harbor, WA
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (992 reviews)
"The property was dated and no frills, but clean. When they say its a micro room, they mean it, I could nearly touch both walls and hit my elbows in the shower. For the island, the price was good and it was walkable to down town and breakfast options. The staff were super friendly though and I would ..."

Reviewed on Jul 10, 2025

The Orca Inn
Friday Harbor Suites
Friday Harbor Suites
2.5 out of 5
680 Spring Street, Friday Harbor, WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.4/10 Very Good! (1,000 reviews)
"N/a"

Reviewed on Jun 30, 2025

Friday Harbor Suites
Earthbox Inn & Spa
Earthbox Inn & Spa
2.5 out of 5
410 Spring Street, Friday Harbor, WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (925 reviews)
"Everything is great here! Beautiful property. Convenient location. Comfortable and clean room and beds. Love it!"

Reviewed on Jul 8, 2025

Earthbox Inn & Spa
Bird Rock Hotel
Bird Rock Hotel
2 out of 5
35 First Street, Friday Harbor, WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Our guests praise the bathrooms in our reviews. Popular attractions Whale ...
8.6/10 Excellent! (344 reviews)
"Nice place! Friendly staff!"

Reviewed on Jun 22, 2025

Bird Rock Hotel
Snug Harbor Resort
Snug Harbor Resort
2.5 out of 5
1997 Mitchell Bay Rd, Friday Harbor, WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff in our reviews. Popular attractions English ...
9.8/10 Exceptional! (394 reviews)
"Unique and simply beautiful . We will be back for sure"

Reviewed on Jul 10, 2025

Snug Harbor Resort
Friday Harbor House
Friday Harbor House
3.5 out of 5
130 West Street, Friday Harbor, WA
Stay at this 3.5-star business-friendly hotel in Friday Harbor. Enjoy free WiFi, free parking, and breakfast (surcharge). Our guests praise the helpful staff ...
9.4/10 Exceptional! (223 reviews)
"The location was perfect. The check in was seamless. Room 36 is a corner room with fantastic views. Best in the harbor we thought. Sadie at the bar was a joy. They have complimentary cookies and potato chips. We loved our stay here."

Reviewed on Jun 9, 2025

Friday Harbor House
Tucker House Inn
Tucker House Inn
4 out of 5
275 C Street, Friday Harbor, WA
Stay at this 4-star beach B&B in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff in our reviews. Popular ...
9.2/10 Wonderful! (265 reviews)
"Beautiful and quiet destination."

Reviewed on Jul 10, 2025

Tucker House Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Hotels With Free Airport Shuttle

Earthbox Inn & Spa
Earthbox Inn & Spa
2.5 out of 5
410 Spring Street, Friday Harbor, WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (925 reviews)
"Everything is great here! Beautiful property. Convenient location. Comfortable and clean room and beds. Love it!"

Reviewed on Jul 8, 2025

Earthbox Inn & Spa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.