Search Cheap Flights to
San Juan Island

Search 400 airlines and 321,000 hotels worldwide.

Stop Planning & Start Exploring

FREE 24 hour cancellation on most flights

San Juan Island Flights as Low as $66

Prices found within past 7 days. Prices and availability subject to change. Additional terms may apply.

Frontier Airlines
Frontier Airlines
Frontier Airlines
Frontier Airlines
Frontier Airlines
Delta
Frontier Airlines
Frontier Airlines
Hawaiian Airlines
American Airlines
Alaska Airlines
Delta
United
Alaska Airlines
Sun Country Airlines
American Airlines

Cheap Flights to San Juan Island

Fall in love at first flight with your vacation to San Juan Island by saving a ton of cash on your last-minute cheap flight. There’s no more scouring the internet for a good deal—book your flight to San Juan Island on Hotwire, and you’ll be up, up, and on a getaway in no time.

Because once the wheels are down in San Juan Island, the good times start rolling. So buckle up, you’re in for a fun ride.

Frequently Asked Questions About flights to San Juan Island

Don’t waste your time on endless searches for cheap airline tickets oneway or roundtrip. We’ll have you on your way to San Juan Island with a tiny bag of pretzels in your hand before you can say “tray tables in the upright position”—and for a ticket price that works for your vacay budget.

So all you have to worry about is where you’re headed after the SEA airport.

What is the cheapest month to fly to San Juan Island?

Airline ticket prices fluctuate all the time, depending on the day of the week or the month of the year. The cheapest round trip flights to San Juan Island are in February, but when you book your flight on Hotwire, savings are always in season.

How many airlines fly to San Juan Island?

Variety is the spice of life, even when it comes to booking your next trip. Want options for airlines? You’ll find 16 to choose from for your flight to San Juan Island.

What airport is best to fly into San Juan Island?

When you’re planning your trip to San Juan Island, convenience is the name of the game. Luckily, San Juan Island Friday Harbor Airport is nearby so you can deplane and get going on checking off everything on your San Juan Island must-do list.

How much are flights to San Juan Island?

Got very cheap flights on your vacation itinerary? When you book your airline tickets to San Juan Island on Hotwire, you may just get what’s on your getaway wish list. With tickets as low as $66, you’ll have leftover cash for at least a magazine and a bottle of water at the airport book store.

How to get cheap flights to San Juan Island?

The trick to saving a stack of cash on your flight to San Juan Island? Snatch up that Hotwire flight deal when you see a killer rate because it could be gone in a flash. And with flights as low as $66 right now, why wait?

San Juan Island Flight Information
Destination airport
Seattle - Tacoma Intl.
Destination airport IATA code
SEA
Roundtrip price
$66

Last Minute Hotel Deals in San Juan Island

Inn to the Woods B&B

Inn to the Woods B&B

3.5 out of 5
46 Elena Drive Friday Harbor WA
Stay at this B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Reuben Tarte Memorial Park and Mt. Grant Preserve are ...
9.6/10 Exceptional! (89 reviews)
EVERYTHING about the Inn to the Woods was OUTSTANDING!!!!

Reviewed on Jan 12, 2026

Inn to the Woods B&B
Snug Harbor Resort

Snug Harbor Resort

2.5 out of 5
1997 Mitchell Bay Rd Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff in our reviews. Popular attractions English ...
9.8/10 Exceptional! (449 reviews)
Great spot to enjoy peace and quiet!

Reviewed on Jan 26, 2026

Snug Harbor Resort
Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.4/10 Very Good! (1,000 reviews)
Good attitude

Reviewed on Dec 30, 2025

Friday Harbor Suites
Friday Harbor House

Friday Harbor House

3.5 out of 5
130 West Street Friday Harbor WA
Book a stay at this business-friendly hotel in Friday Harbor. Enjoy free WiFi, free parking, and breakfast (surcharge). Our guests praise the helpful staff in ...
9.4/10 Exceptional! (250 reviews)
Amenities, staff and clean room stood out.

Reviewed on Jan 12, 2026

Friday Harbor House
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (997 reviews)
Great place clean room. Nice people.

Reviewed on Dec 17, 2025

Earthbox Inn & Spa
Roche Harbor Resort

Roche Harbor Resort

3 out of 5
248 Reuben Memorial Dr Friday Harbor WA
Book a stay at this spa resort in Friday Harbor. Enjoy an outdoor pool, a full-service spa, and 3 restaurants. Popular attractions Roche Harbor Marina and San ...
9.2/10 Wonderful! (418 reviews)
Room was clean, beautiful view and stocked with all the essentials. The staff were super friendly and attentive. Definitely will be coming back!

Reviewed on Jan 17, 2026

Roche Harbor Resort
Bird Rock Hotel

Bird Rock Hotel

2 out of 5
35 First Street Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Popular attractions Whale Museum and San Juan Islands Museum of Art are ...
8.8/10 Excellent! (362 reviews)
Beautiful. If you need extra items the lobby has it for you. They have their own products which are great!!!

Reviewed on Oct 17, 2025

Bird Rock Hotel
Tucker House Inn

Tucker House Inn

4 out of 5
275 C Street Friday Harbor WA
Book a stay at this beach B&B in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff in our reviews. Popular ...
9.2/10 Wonderful! (283 reviews)
The room was great for what we needed. The breakfast was great .. delivered to your door! Clean room and with everything you need. The only thing was the bed was a bit of a tight fit.. but we made it work. Overall, I would recommend to friends.

Reviewed on Jan 3, 2026

Tucker House Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Hotels With Free Airport Shuttle

Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (997 reviews)
Great place clean room. Nice people.

Reviewed on Dec 17, 2025

Earthbox Inn & Spa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.