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Hotels in San Juan Island

Last Minute Hot Rate® Hotel Deals in San Juan Island

We Hide Hotel Names So You Can Find 4-Star Hotels At 2-Star Prices. Choose the Location, Star Rating & Amenities. Let Hotwire Find You the Best Deal. Book Today!

Hot Rate® Hotel

3.5-star Hotel in Anacortes
3.5 out of 5

3.5-star Hotel

in Anacortes
23 miles from San Juan Island
$99
per night
$123 total
incl. taxes & fees
3.5-star Hotel in Anacortes

Hot Rate® Hotel

3.5-star Hotel in Ferndale
3.5 out of 5

3.5-star Hotel

in Ferndale
29 miles from San Juan Island
$106
per night
$127 total
incl. taxes & fees
3.5-star Hotel in Ferndale

Hot Rate® Hotel

3.5-star Hotel in Bellingham North
3.5 out of 5

3.5-star Hotel

in Bellingham North
31 miles from San Juan Island
$116
per night
$144 total
incl. taxes & fees
3.5-star Hotel in Bellingham North

Hot Rate® Hotel

3.5-star Hotel in Victoria North
3.5 out of 5

3.5-star Hotel

in Victoria North
15 miles from San Juan Island
$131
per night
$169 total
incl. taxes & fees
3.5-star Hotel in Victoria North
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Choose from 786 San Juan Island Hotel Deals

The Orca Inn
The Orca Inn
2 out of 5
770 Mullis St., Friday Harbor, WA
  • 14 min drive from Roche Harbor Marina
The price is $120 per night from Jun 30 to Jul 1
$120
per night
Jun 30 - Jul 1
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (811 reviews)
"I liked the location close to the downtown area. I liked the fact that it was reasonable priced for the location of the hotel."

Reviewed on Jun 14, 2024

The Orca Inn
Friday Harbor Suites
Friday Harbor Suites
2.5 out of 5
680 Spring Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $215 per night from Jun 30 to Jul 1
$215
per night
Jun 30 - Jul 1
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.2/10 Very Good! (795 reviews)
"9:30pm quiet time was not observed both nights we stayed. Wondering why the landscaping was un-kept. Don't think grass had been mowed for over a week."

Reviewed on Jun 23, 2024

Friday Harbor Suites
Earthbox Inn & Spa
Earthbox Inn & Spa
2.5 out of 5
410 Spring Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $240 per night from Jun 26 to Jun 27
$240
per night
Jun 26 - Jun 27
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the pool and the helpful staff in our ...
8.6/10 Excellent! (802 reviews)
"Great little hotel! Close to town - an easy 5-10 minute walk. Comfortable rooms and easy check in process."

Reviewed on Jun 19, 2024

Earthbox Inn & Spa
Snug Harbor Resort
Snug Harbor Resort
2.5 out of 5
1997 Mitchell Bay Rd, Friday Harbor, WA
  • 7 min drive from Roche Harbor Marina
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff and the clean rooms in our reviews. Popular ...
9.8/10 Exceptional! (294 reviews)
"This property is just stunning. There isnt a less than spectacular view to be had anywhere."

Reviewed on Jun 22, 2024

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Snug Harbor Resort
Tucker House Inn
Tucker House Inn
4 out of 5
275 C Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $309 per night from Jul 1 to Jul 2
$309
per night
Jul 1 - Jul 2
Stay at this 4-star beach B&B in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Popular attractions Whale Museum and San Juan Islands ...
9.2/10 Wonderful! (219 reviews)
"Restaurant was noisy after closing for at least an hour. That noise travels right up the back stairs."

Reviewed on Jun 16, 2024

Tucker House Inn
Bird Rock Hotel
Bird Rock Hotel
2 out of 5
35 First Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Our guests praise the clean rooms in our reviews. Popular attractions ...
8.6/10 Excellent! (312 reviews)
"Perfect location. Property was quiet and I enjoyed checking in online, using a code to enter. Owner/operator was very responsive via text."

Reviewed on Jun 10, 2024

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Bird Rock Hotel
Friday Harbor House
Friday Harbor House
3.5 out of 5
130 West Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $469 per night from Jun 25 to Jun 26
$469
per night
Jun 25 - Jun 26
Stay at this 3.5-star business-friendly hotel in Friday Harbor. Enjoy free WiFi, free parking, and breakfast (surcharge). Popular attractions Whale Museum and ...
9.4/10 Exceptional! (192 reviews)
"We planned a short getaway to Friday Harbor with our two small children. I booked the room with the garden terrace not quite knowing what to expect. WOW! Although we felt a little awkward with the kids (most people staying there at the time did not have kids), we were very warmly welcomed by the ..."

Reviewed on May 14, 2024

Friday Harbor House
Trumpeter Inn
Trumpeter Inn
3 out of 5
318 Trumpeter Way, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $250 per night from Jun 25 to Jun 26
$250
per night
Jun 25 - Jun 26
Stay at this 3-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Our guests praise the breakfast and the comfy beds in our reviews. ...
9.8/10 Exceptional! (191 reviews)
"Oh my gosh!! This place is absolutely perfect!! The owner Claudia is just simply the sweetest person and makes sure everything is perfect for each of her guests. She makes sure you feel right at home from check in to check out. The property is gorgeous and I can’t wait to come again and stay here. ..."

Reviewed on Jun 1, 2024

Trumpeter Inn
Inn to the Woods B&B
Inn to the Woods B&B
3.5 out of 5
46 Elena Drive, Friday Harbor, WA
  • 6 min drive from Roche Harbor Marina
Stay at this 3.5-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Reuben Tarte Memorial Park and Mt. Grant Preserve ...
9.8/10 Exceptional! (69 reviews)
"Inn at the Woods was beautiful and tranquil. We were greeted and set up in the Forest Room, which offered a great view of the trees and the Sportsman Lake across the street. We brought our two dogs, which made great use of the nearby loop trail. It’s just a short drive from Friday Harbor town, and ..."

Reviewed on Apr 29, 2024

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Inn to the Woods B&B
Roche Harbor Resort
Roche Harbor Resort
3 out of 5
248 Reuben Memorial Dr, Friday Harbor, WA
  • 1 min walk from Roche Harbor Marina
The price is $340 per night from Jul 7 to Jul 8
$340
per night
Jul 7 - Jul 8
Stay at this 3-star spa resort in Friday Harbor. Enjoy an outdoor pool, a full-service spa, and 3 restaurants. Popular attractions Roche Harbor Marina and San ...
9/10 Wonderful! (355 reviews)
"Roche Harbor is a beautiful place! The house was perfect. All bedrooms have a bathroom. I only have one suggestion, needs a new pullout sofa in the living room. We didn’t use the bed, but while sitting on it the cushions don’t stay in place, making it uncomfortable. Other than that, no complaints. ..."

Reviewed on Jun 20, 2024

Roche Harbor Resort
Majestic Inn & Spa
Majestic Inn & Spa
4 out of 5
419 Commercial Avenue, Anacortes, WA
  • 19 min drive from Roche Harbor Marina
The price is $244 per night from Jul 1 to Jul 2
$244
per night
Jul 1 - Jul 2
Stay at this 4-star spa hotel in Anacortes. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the breakfast and the restaurant in our ...
9.2/10 Wonderful! (1,003 reviews)
"It was great"

Reviewed on Jun 18, 2024

Majestic Inn & Spa
Anacortes Ship Harbor Inn
Anacortes Ship Harbor Inn
3 out of 5
5316 Ferry Terminal Road, Anacortes, WA
  • 21 min drive from Roche Harbor Marina
The price is $169 per night from Jun 26 to Jun 27
$169
per night
Jun 26 - Jun 27
Stay at this 3-star hotel in Anacortes. Enjoy free breakfast, free WiFi, and free parking. Our guests praise the helpful staff and the clean rooms in our reviews. ...
8.8/10 Excellent! (1,001 reviews)
Beautiful property with great views
"We’ve stayed here many times and have had seamless experiences. This stay had a snafu but the staff and management were on it immediately and handled everything great. We were very happy with everything and now we know that if there is a hiccup that they are on it. Btw the land and views and frogs ..."

Reviewed on Jun 21, 2024

Anacortes Ship Harbor Inn
See all 786 properties in San Juan Island
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

HOTW-Hotel-Deals-726-959@2x.jpg (1918×258)*Savings based on Hot Rate® hotel bookings as compared with the lowest published rates found on leading retail travel sites. Hot Rates are different from retail rates. With Hot Rates you enter the date, location and star rating. Hotel revealed only after booking. All bookings final.

Find cheap hotels in San Juan Island

You’re not an average traveler—and Hotwire knows it. Your wanderlust takes you off the beaten path to discover unique adventures and every travel destination’s lesser-known tourist scenes. Hotwire has the hookup! Book your San Juan Island hotel with Hotwire to complete your one-of-a-kind travel checklist.

For you, intrepid voyager, Hotwire has a large selection of the best hotels in San Juan Island.

Choosing the right hotel in Washington has everything to do with the way you want your trip to go. If you’ve scribbled a few obscure destinations on your itinerary, you probably already have a good sense of how your getaway is taking shape. Lean into that by booking one of San Juan Island’s 786 hotels. Choose the one that best catches your trip’s tourist drift.

If you’re traveling during the week for business, Hotwire can score you a luxury hotel for as low as $99. In town for pleasure? Hotwire still has you covered. If you’re in the mood for a quick last-minute weekend getaway or spa retreat, you can get up to 60% San Juan Island hotel deals at the last minute.

While traveling, where you stay plays a major role in your overall vacation enjoyment. Choosing the right hotel is just as important as making sure you book the right flight and car rental. If you’re traveling with family or friends, you may need to book a hotel with connecting rooms. If you enjoy an elegant and relaxing hotel ambiance, opt for one of Hotwire’s luxury hotels in San Juan Island. No matter your reason for visiting San Juan Island, with Hotwire’s large selection of hotels in the area, you’re sure to book a hotel that meets all your accommodation needs.

Frequently Asked Questions About San Juan Island hotels

Where can I find the best last-minute travel deals?

If you’re traveling in the spirit of spontaneity, you’ll love the idea of leaving your exact hotel choice up to chance. With Hotwire Hot Rates, you can save up to 60% off your next flight, hotel, or car rental. Just plug in your general preferences and let Hotwire choose last-minute hotel deals in San Juan Island for as low as $99.

How many hotels are there in San Juan Island?

With over 786 hotels in San Juan Island, you’re sure to find one that best matches your travel mood. When you book with Hotwire, you can score a stellar home away from home for as low as $99.

How to find cheap car rentals in San Juan Island?

Finding a cheap car rental deal in San Juan Island is as easy as scoring cheap hotels in San Juan Island. Hotwire partners with top-of-the-line car rental companies to bring you a large selection of affordable options. Whether you’re in need of a large SUV for the entire family or a more compact but stylish vehicle, Hotwire has you covered. You can even save up to 60% off a car rental deal if you book a Hotwire Hot Rate at the last minute.

Is it safe to travel to San Juan Island now?

With recent COVID-19 closures and reopenings, many people are wondering, “Is it safe to travel to San Juan Island right now?” When it’s time to book your getaway, be sure to check out the most up-to-date information on all safety measures, any restrictions, and guidance on traveling during the coronavirus pandemic.