Search for Cheap Deals on
Hotels in San Juan Island

Choose from 798 San Juan Island Hotel Deals

Inn to the Woods B&B
Inn to the Woods B&B
3.5 out of 5
46 Elena Drive, Friday Harbor, WA
  • 6 min drive from Roche Harbor Marina
Stay at this 3.5-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Reuben Tarte Memorial Park and Mt. Grant Preserve ...
9.6/10 Exceptional! (78 reviews)
"Very comfortable and cozy. Great host. Good communication and very welcoming. Access is a bit difficult if you have mobility issues but they were very accommodating to allow us to use a different access"

Reviewed on Nov 11, 2024

Inn to the Woods B&B
Friday Harbor Suites
Friday Harbor Suites
2.5 out of 5
680 Spring Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $220 per night from May 11 to May 12
$220
includes taxes & fees
May 11 - May 12
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.2/10 Very Good! (961 reviews)
"Loved this place so close to Everything ! I’m coming here again forsure"

Reviewed on Apr 14, 2025

Friday Harbor Suites
The Orca Inn
The Orca Inn
2 out of 5
770 Mullis St., Friday Harbor, WA
  • 14 min drive from Roche Harbor Marina
The price is $111 per night from Apr 18 to Apr 19
$111
includes taxes & fees
Apr 18 - Apr 19
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (951 reviews)
"Easy check in"

Reviewed on Apr 1, 2025

The Orca Inn
Snug Harbor Resort
Snug Harbor Resort
2.5 out of 5
1997 Mitchell Bay Rd, Friday Harbor, WA
  • 7 min drive from Roche Harbor Marina
The price is $249 per night from Apr 29 to Apr 30
$249
includes taxes & fees
Apr 29 - Apr 30
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff in our reviews. Popular attractions English ...
9.8/10 Exceptional! (366 reviews)
Absolutely Exceptional
"Snug Harbor offers an absolutely premium experience at a tremendous value. The location of the resort perfectly captures the essence and beauty of the San Juan Islands, and the quality, cleanliness, and attention to detail is unparalleled. Along with that, the staff make you feel right at home from ..."

Reviewed on Apr 11, 2025

Snug Harbor Resort
Earthbox Inn & Spa
Earthbox Inn & Spa
2.5 out of 5
410 Spring Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $238 per night from Apr 20 to Apr 21
$238
includes taxes & fees
Apr 20 - Apr 21
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (884 reviews)
"Nice and clean; friendly staff."

Reviewed on Apr 10, 2025

Earthbox Inn & Spa
Roche Harbor Resort
Roche Harbor Resort
3 out of 5
248 Reuben Memorial Dr, Friday Harbor, WA
  • 1 min walk from Roche Harbor Marina
The price is $276 per night from Apr 20 to Apr 21
$276
includes taxes & fees
Apr 20 - Apr 21
Stay at this 3-star spa resort in Friday Harbor. Enjoy an outdoor pool, a full-service spa, and 3 restaurants. Popular attractions Roche Harbor Marina and San ...
9/10 Wonderful! (375 reviews)
"Bathroom was nice 😆😄"

Reviewed on Apr 5, 2025

Roche Harbor Resort
Friday Harbor House
Friday Harbor House
3.5 out of 5
130 West Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $308 per night from Apr 21 to Apr 22
$308
includes taxes & fees
Apr 21 - Apr 22
Stay at this 3.5-star business-friendly hotel in Friday Harbor. Enjoy free WiFi, free parking, and breakfast (surcharge). Our guests praise the helpful staff ...
9.4/10 Exceptional! (217 reviews)

Reviewed on Apr 2, 2025

Friday Harbor House
Tucker House Inn
Tucker House Inn
4 out of 5
275 C Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $207 per night from Apr 20 to Apr 21
$207
includes taxes & fees
Apr 20 - Apr 21
Stay at this 4-star beach B&B in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff in our reviews. Popular ...
9.2/10 Wonderful! (251 reviews)
"Cute place, clean, courteous staff"

Reviewed on Mar 29, 2025

Tucker House Inn
Bird Rock Hotel
Bird Rock Hotel
2 out of 5
35 First Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $191 per night from Apr 21 to Apr 22
$191
includes taxes & fees
Apr 21 - Apr 22
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Our guests praise the bathrooms in our reviews. Popular attractions Whale ...
8.8/10 Excellent! (339 reviews)
"Excellent and prompt communication from staff. Easy remote check-in. Very lovely space and comfortable accommodations."

Reviewed on Feb 23, 2025

Bird Rock Hotel
Trumpeter Inn
Trumpeter Inn
3 out of 5
318 Trumpeter Way, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $197 per night from Apr 28 to Apr 29
$197
includes taxes & fees
Apr 28 - Apr 29
Stay at this 3-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions San Juan Historical Society and Museum and San ...
9.8/10 Exceptional! (221 reviews)
"The staff were so friendly and the area was amazing. The only thing we didn’t like was the bread for breakfast, It was not fresh. Except bread, my wife and I highly recommend this place. The details and everything were so beautiful."

Reviewed on Mar 24, 2025

Trumpeter Inn
Friday Harbor Grand B&B
Friday Harbor Grand B&B
3 out of 5
345 Blair Ave, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
Stay at this 3-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions San Juan Islands Museum of Art and San Juan ...
9.6/10 Exceptional! (127 reviews)
"The host was lovely. The property was interesting—chickens, lovely flower garden, pond."

Reviewed on Sep 21, 2024

Friday Harbor Grand B&B
Anacortes Ship Harbor Inn
Anacortes Ship Harbor Inn
3 out of 5
5316 Ferry Terminal Road, Anacortes, WA
  • 21 min drive from Roche Harbor Marina
The price is $132 per night from May 4 to May 5
$132
includes taxes & fees
May 4 - May 5
Stay at this 3-star hotel in Anacortes. Enjoy free breakfast, free WiFi, and free parking. Our guests praise the helpful staff and the clean rooms in our reviews. ...
8.8/10 Excellent! (1,004 reviews)
"Beautiful view of the water and Ferry terminal. Very relaxing, birds chirping in the morning and deer grazing outside our room. Close to downtown Anacortes. Staff available if needed. Room was basic and clean. I would recommend this no frills hidden treasure for a quite getaway."

Reviewed on Apr 10, 2025

Anacortes Ship Harbor Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Find cheap hotels in San Juan Island

You’re not an average traveler—and Hotwire knows it. Your wanderlust takes you off the beaten path to discover unique adventures and every travel destination’s lesser-known tourist scenes. Hotwire has the hookup! Book your San Juan Island hotel with Hotwire to complete your one-of-a-kind travel checklist.

For you, intrepid voyager, Hotwire has a large selection of the best hotels in San Juan Island.

Choosing the right hotel in Washington has everything to do with the way you want your trip to go. If you’ve scribbled a few obscure destinations on your itinerary, you probably already have a good sense of how your getaway is taking shape. Lean into that by booking one of San Juan Island’s 798 hotels. Choose the one that best catches your trip’s tourist drift.

If you’re traveling during the week for business, Hotwire can score you a luxury hotel for as low as $111. In town for pleasure? Hotwire still has you covered. If you’re in the mood for a quick last-minute weekend getaway or spa retreat, you can get great San Juan Island hotel deals at the last minute.

While traveling, where you stay plays a major role in your overall vacation enjoyment. Choosing the right hotel is just as important as making sure you book the right flight and car rental. If you’re traveling with family or friends, you may need to book a hotel with connecting rooms. If you enjoy an elegant and relaxing hotel ambiance, opt for one of Hotwire’s luxury hotels in San Juan Island. No matter your reason for visiting San Juan Island, with Hotwire’s large selection of hotels in the area, you’re sure to book a hotel that meets all your accommodation needs.

Frequently Asked Questions About San Juan Island hotels

Where can I find the best last-minute travel deals?

If you’re traveling in the spirit of spontaneity, you’ll love the idea of leaving your exact hotel choice up to chance. With Hotwire Hot Rates, you can unlock great deals on your next flight, hotel, or car rental. Just plug in your general preferences and let Hotwire choose last-minute hotel deals in San Juan Island for as low as $111.

How many hotels are there in San Juan Island?

With over 798 hotels in San Juan Island, you’re sure to find one that best matches your travel mood. When you book with Hotwire, you can score a stellar home away from home for as low as $111.

How to find cheap car rentals in San Juan Island?

Finding a cheap car rental deal in San Juan Island is as easy as scoring cheap hotels in San Juan Island. Hotwire partners with top-of-the-line car rental companies to bring you a large selection of affordable options. Whether you’re in need of a large SUV for the entire family or a more compact but stylish vehicle, Hotwire has you covered. You can unlock great car rental deals if you book a Hotwire Hot Rate at the last minute.